22.10.1

• removed CreateIlluminaSamplesheet
• updated compareWithVKGL script

22.04.1

• updated validationCheck
• fixing compareWithVKGL (from Exoom_v3(+/-50bp) --> Exoom_v1 bedfile(+/-20bp))

ngs-utils 22.01.1

added LiftOver script
splitted compareWithVKGL in own script (from checkValidation)

21.11.3

• added standalone version of the gVCF2BED script, it is possible to run with GATK4 or GATK3
• updated the checkValidationNGS_DNA script (v5), it is now possible to choose which type of genome build you want (ucsc or regular)
• removed unused scripts

21.11.2

• updated NGS_Validation script (for VKGL)

Release dedicated for coverages calculations based on gVCFs.

Release dedicated for coverages calculations based on gVCFs.

gvcf2bed2.py
group_per_gene.py

ngs-utils 21.04.3

All scripts were relocated to a bin/ subdir.

ngs-utils 21.04.2

• Small bug fix in pseudomisation script.
• Last release before relocation of all scripts to a bin/ subfolder as part of cleanup of this repo.

ngs-utils 21.04.1

• added pseudo_array.sh
• updated checkValidation_NGS_v2 (expanded with giab vs hc)

21.03.2

Last release before cleanup