18.08.1

• renameFastQs.bash:
  • Exit with error and exit code 1 when one or more FastQs failed QC.
  • Fixed bugs in error handling and logging.

18.07.1

• renameFastQs.bash: fix for exit code bug.

18.06.2

updated the making bed files part

18.06.1

• Added managevariantlist parser + updated makebedfordiagnostics
• Added bamUtil tool to calculated coverage of specific position in BAM files
• Added renameFastQs.bash script to rename Illumina FastQ files with exotic filenames to UMCG standard Illumina FastQ format.

ngs-utils 18.02.1

• added indexing in Cramconversion
• bugfix in bamout
• added 30x coverage statistics in coverageperGene + coverageperTarget

ngs-utils 18.01.1

updates in:

• checkNGSValidation
• countCoverage
• countCoveragePerGene
• tortilla has cramconversion as option
  added:
• cramconversion

ngs-utils 17.12.1

Made protocol for coverage calculations of targetpanels (per base and per target)
Added this protocol to tortilla.sh

ngs-utils 17.11.9

17.11.9

New version PGx

ngs-utils 17.11.1

• cleaning up
• updated making bedfiles

ngs-utils 17.10.3

PGx parser new version