16.10.1

• Relocated ctop to cluster-utils repo.
• Added rasqualize Rscript

ngs-utils 16.09.1

NGS_DNA

• now making real bed files and interval lists
• removed pull_DNA_Seq_stats.pl

NGS_RNA

• Added dual barcode option

Hartwig

• Made ConCordanceCheck Protocol for Hartwig Medical Foundation procedure

RNAseqParser

• Updates in RNAseqParser directory by users npklein, CGUTA and raguirreg

Added scripts for phasing pipeline

Merge pull request #136 from freerkvandijk/master

Two scripts needed for RNA-seq phasing pipeline

ngs-utils 16.05.1

updated prepare_NGS_Bedfiles.sh (default = chr)

16.04.1

• small update in pull_DNA_seq_stats (removed confusing question and exclamation mark)
• added new barcodeType for demultiplexing
• Updated SplitVcfFileBySample for use on calculon

16.03.1

• changed make_compute_bedfiles_calculon to prepare_NGS_Bedfiles
• edited pull_RNA_seq_stats.py: update for alignment metrics
• added pull_DNA_seq_stats.py

16.02.2

• changed layout for outputfile, and made number of given imputfiles flexible (pull_RNA_Seq_Stats.py)
• bugfixes + added automatic hostdetection (make_compute_bedfiles_calculon.sh)

16.02.1

• small bugfixes for NGS_DNA pipeline
• bugfixes for automated demultiplexing

Added:

• rnaseq_parser
• PhasingQC

16.01.1

• updated bed file maker (make_compute5_bedfiles_calculon) with per chromosome function
• added automate.sh to ngs-utils + changed path in automate.sh (works now on gattaca machines)

15.12.2

• Updated reference genome composer for changes in NCBI FTP server
• fix in getStatistics R script (wrong line number, 0 instead of 6)