Add GMM-Demux #12750

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Triggered via pull request July 30, 2024 13:06

mari-ga

synchronize #5892

mari-ga:gmm-demux

Status Cancelled

Total duration 5m 8s

Artifacts –

test.yml

on: pull_request

nf-test-changes

Matrix: nf-test

Matrix: nf-core-lint-modules

Matrix: nf-core-lint-modules

Matrix: pytest

Annotations

275 errors and 2 warnings

editorconfig

Process completed with exit code 1.

nf-core-lint-modules (eggnogmapper)

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nf-test (modules/nf-core/windowmasker/ustat, docker_self_hosted)

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nf-test (modules/nf-core/windowmasker/ustat, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/windowmasker/mkcounts, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/windowmasker/mkcounts, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/chewbbaca/createschema, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/windowmasker/mkcounts, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/windowmasker/ustat, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/diamond/blastx, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/diamond/blastx, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/lima, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/lima, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/prokka, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/narfmap/align, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/lima, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/diamond/blastx, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/picard/crosscheckfingerprints, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/vardictjava, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/windowmasker/convert, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/tabix/tabix, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/vardictjava, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/vardictjava, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/windowmasker/convert, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/windowmasker/convert, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/antismash/antismashlite, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (subworkflows/nf-core/bcl_demultiplex, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/antismash/antismashlite, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (subworkflows/nf-core/bcl_demultiplex, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/bedops/convert2bed, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/bclconvert, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/bclconvert, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/bedops/convert2bed, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/bedops/convert2bed, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/diamond/makedb, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/diamond/makedb, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/diamond/makedb, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/nanofilt, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/nanofilt, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/happy/ftxpy, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/picard/crosscheckfingerprints, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/nanofilt, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/picard/crosscheckfingerprints, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/antismash/antismashlite, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/prokka, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/biscuit/align, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/prokka, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/happy/ftxpy, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/biscuit/align, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/happy/ftxpy, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/biscuit/align, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/kalign/align, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/plink/epistasis, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/plink/epistasis, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/tcoffee/tcs, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/kalign/align, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/tcoffee/tcs, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (subworkflows/nf-core/fastq_align_mapad, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/tcoffee/tcs, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/plink/epistasis, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/kalign/align, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (subworkflows/nf-core/fastq_align_mapad, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/svdb/query, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (subworkflows/nf-core/fastq_align_mapad, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/survivor/stats, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/survivor/stats, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/svdb/query, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/plink/fastepistasis, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/survivor/stats, docker_self_hosted)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/plink/fastepistasis, conda)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-test (modules/nf-core/svdb/query, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-core-lint-modules (biscuit/bsconv)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-core-lint-modules (biscuit/bsconv)

The operation was canceled.

nf-test (modules/nf-core/plink/fastepistasis, singularity)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-core-lint-modules (biscuit/align)

Canceling since a higher priority waiting request for 'Run tests-5892' exists

nf-core-lint-modules (biscuit/align)

The operation was canceled.

confirm-pass

Process completed with exit code 1.

pytest-changes

The following actions uses Node.js version which is deprecated and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

The `python-version` input is not set. The version of Python currently in `PATH` will be used.