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Added nf-test for nextclade/datasetget #13732

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Added nf-test for nextclade/datasetget

Added nf-test for nextclade/datasetget #13732

Run time

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Job Run time
pre-commit
9s
pytest-changes
8s
editorconfig
10s
nf-test-changes
1m 51s
prettier
52s
pytest
0s
nf-core-lint-modules (utils_nextflow_pipeline)
44s
nf-core-lint-modules (bam_qc_picard)
47s
nf-core-lint-modules (pairtools/select)
1m 13s
nf-core-lint-modules (rtgtools/pedfilter)
1m 6s
nf-core-lint-modules (purgedups/splitfa)
1m 22s
nf-core-lint-modules (rapidnj)
1m 17s
nf-core-lint-modules (samtools/getrg)
1m 15s
nf-core-lint-modules (purgedups/pbcstat)
1m 22s
nf-core-lint-modules (shasta)
1m 10s
nf-core-lint-modules (picard/mergesamfiles)
1m 9s
nf-core-lint-modules (tiara/tiara)
1m 10s
nf-core-lint-modules (scoary)
1m 19s
nf-core-lint-modules (ucsc/bigwigaverageoverbed)
1m 23s
nf-test (modules/nf-core/pairtools/select, conda)
3m 10s
nf-core-lint-modules (pairtools/merge)
1m 23s
nf-test (modules/nf-core/pairtools/select, docker_self_hosted)
1m 48s
nf-core-lint-modules (yahs)
1m 9s
nf-test (modules/nf-core/pairtools/select, singularity)
1m 38s
nf-core-lint-modules (picard/collectwgsmetrics)
1m 20s
nf-test (modules/nf-core/rtgtools/pedfilter, conda)
3m 44s
nf-core-lint-modules (sambamba/flagstat)
1m 34s
nf-test (modules/nf-core/rtgtools/pedfilter, docker_self_hosted)
2m 46s
nf-core-lint-modules (nextclade/datasetget)
1m 23s
nf-core-lint-modules (samtools/depth)
1m 23s
nf-test (modules/nf-core/rtgtools/pedfilter, singularity)
3m 10s
nf-test (modules/nf-core/purgedups/splitfa, conda)
6m 17s
nf-test (modules/nf-core/purgedups/splitfa, docker_self_hosted)
1m 35s
nf-test (modules/nf-core/purgedups/splitfa, singularity)
1m 54s
nf-test (subworkflows/nf-core/utils_nextflow_pipeline, conda)
4m 21s
nf-test (subworkflows/nf-core/utils_nextflow_pipeline, docker_self_hosted)
2m 43s
nf-test (subworkflows/nf-core/utils_nextflow_pipeline, singularity)
2m 14s
nf-test (modules/nf-core/rapidnj, conda)
3m 33s
nf-test (modules/nf-core/rapidnj, docker_self_hosted)
1m 52s
nf-test (modules/nf-core/rapidnj, singularity)
2m 6s
nf-test (modules/nf-core/samtools/getrg, conda)
3m 29s
nf-test (modules/nf-core/samtools/getrg, docker_self_hosted)
1m 32s
nf-test (modules/nf-core/samtools/getrg, singularity)
1m 44s
nf-test (modules/nf-core/purgedups/pbcstat, conda)
5m 31s
nf-test (modules/nf-core/purgedups/pbcstat, docker_self_hosted)
1m 34s
nf-test (modules/nf-core/purgedups/pbcstat, singularity)
1m 46s
nf-test (modules/nf-core/shasta, conda)
3m 53s
nf-test (modules/nf-core/shasta, docker_self_hosted)
1m 16s
nf-test (modules/nf-core/shasta, singularity)
1m 59s
nf-test (modules/nf-core/picard/mergesamfiles, conda)
3m 49s
nf-test (modules/nf-core/picard/mergesamfiles, docker_self_hosted)
2m 20s
nf-test (modules/nf-core/picard/mergesamfiles, singularity)
3m 57s
nf-test (modules/nf-core/tiara/tiara, conda)
4m 21s
nf-test (modules/nf-core/tiara/tiara, docker_self_hosted)
2m 36s
nf-test (modules/nf-core/tiara/tiara, singularity)
3m 30s
nf-test (modules/nf-core/scoary, conda)
4m 54s
nf-test (modules/nf-core/scoary, docker_self_hosted)
3m 24s
nf-test (modules/nf-core/scoary, singularity)
2m 49s
nf-test (modules/nf-core/ucsc/bigwigaverageoverbed, conda)
2m 10s
nf-test (modules/nf-core/ucsc/bigwigaverageoverbed, docker_self_hosted)
1m 34s
nf-test (modules/nf-core/ucsc/bigwigaverageoverbed, singularity)
1m 49s
nf-test (modules/nf-core/pairtools/merge, conda)
2m 43s
nf-test (modules/nf-core/pairtools/merge, docker_self_hosted)
2m 11s
nf-test (modules/nf-core/pairtools/merge, singularity)
1m 35s
nf-test (modules/nf-core/yahs, conda)
2m 46s
nf-test (modules/nf-core/yahs, docker_self_hosted)
1m 4s
nf-test (modules/nf-core/yahs, singularity)
54s
nf-test (modules/nf-core/picard/collectwgsmetrics, conda)
7m 45s
nf-test (modules/nf-core/picard/collectwgsmetrics, docker_self_hosted)
2m 59s
nf-test (modules/nf-core/picard/collectwgsmetrics, singularity)
4m 51s
nf-test (subworkflows/nf-core/bam_qc_picard, conda)
10m 18s
nf-test (subworkflows/nf-core/bam_qc_picard, docker_self_hosted)
5m 8s
nf-test (subworkflows/nf-core/bam_qc_picard, singularity)
3m 29s
nf-test (modules/nf-core/sambamba/flagstat, conda)
2m 29s
nf-test (modules/nf-core/sambamba/flagstat, docker_self_hosted)
1m 8s
nf-test (modules/nf-core/sambamba/flagstat, singularity)
1m 49s
nf-test (modules/nf-core/nextclade/datasetget, conda)
2m 52s
nf-test (modules/nf-core/nextclade/datasetget, docker_self_hosted)
57s
nf-test (modules/nf-core/nextclade/datasetget, singularity)
52s
nf-test (modules/nf-core/samtools/depth, conda)
3m 38s
nf-test (modules/nf-core/samtools/depth, docker_self_hosted)
2m 0s
nf-test (modules/nf-core/samtools/depth, singularity)
2m 4s
confirm-pass
1s
3h 13m 0s