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Dereplicate #13763

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Dereplicate

Dereplicate #13763

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Job Run time
pytest-changes
5s
pre-commit
14s
nf-test-changes
4m 4s
editorconfig
10s
prettier
58s
pytest
0s
nf-core-lint-modules (bam_qc_picard)
43s
nf-core-lint-modules (utils_nextflow_pipeline)
47s
nf-core-lint-modules (bam_subsampledepth_samtools)
41s
nf-core-lint-modules (fastq_fastqc_umitools_trimgalore)
46s
nf-core-lint-modules (fastq_fastqc_umitools_fastp)
45s
nf-core-lint-modules (vcflib/vcfuniq)
2m 3s
nf-core-lint-modules (pairtools/merge)
1m 10s
nf-core-lint-modules (pairtools/flip)
1m 10s
nf-core-lint-modules (verifybamid/verifybamid)
2m 0s
nf-core-lint-modules (vt/decompose)
2m 3s
nf-core-lint-modules (ucsc/gtftogenepred)
1m 56s
nf-core-lint-modules (samtools/getrg)
2m 2s
nf-core-lint-modules (ncbigenomedownload)
1m 10s
nf-core-lint-modules (rtgtools/pedfilter)
1m 12s
nf-core-lint-modules (scoary)
2m 30s
nf-core-lint-modules (ucsc/bigwigaverageoverbed)
1m 9s
nf-core-lint-modules (adapterremovalfixprefix)
1m 28s
nf-core-lint-modules (pairtools/dedup)
1m 11s
nf-core-lint-modules (multiqc)
1m 7s
nf-core-lint-modules (sambamba/flagstat)
2m 0s
nf-core-lint-modules (goleft/indexcov)
2m 1s
nf-core-lint-modules (sambamba/markdup)
1m 56s
nf-core-lint-modules (pairtools/stats)
1m 15s
nf-core-lint-modules (ngmerge)
1m 11s
nf-core-lint-modules (fastqc)
1m 24s
nf-core-lint-modules (samtools/depth)
2m 0s
nf-core-lint-modules (vsearch/dereplicate)
1m 59s
nf-core-lint-modules (purgedups/pbcstat)
1m 11s
nf-core-lint-modules (purgedups/splitfa)
1m 55s
nf-core-lint-modules (picard/positionbaseddownsamplesam)
1m 13s
nf-core-lint-modules (arriba/download)
1m 25s
nf-core-lint-modules (pairtools/select)
1m 13s
nf-core-lint-modules (samtools/fasta)
2m 34s
nf-core-lint-modules (nextclade/datasetget)
1m 14s
nf-core-lint-modules (shasta)
1m 55s
nf-core-lint-modules (pairix)
1m 11s
nf-core-lint-modules (picard/collectwgsmetrics)
1m 9s
nf-core-lint-modules (picard/mergesamfiles)
1m 11s
nf-core-lint-modules (ichorcna/run)
1m 11s
nf-core-lint-modules (arcashla/extract)
1m 11s
nf-core-lint-modules (vsearch/usearchglobal)
2m 3s
nf-core-lint-modules (rapidnj)
2m 2s
nf-test (modules/nf-core/vcflib/vcfuniq, conda)
3m 25s
nf-core-lint-modules (tiara/tiara)
1m 54s
nf-test (modules/nf-core/vcflib/vcfuniq, docker_self_hosted)
1m 7s
nf-core-lint-modules (yahs)
1m 58s
nf-test (modules/nf-core/vcflib/vcfuniq, singularity)
1m 52s
nf-core-lint-modules (ichorcna/createpon)
1m 9s
nf-test (modules/nf-core/pairtools/merge, conda)
3m 19s
nf-core-lint-modules (pints/caller)
1m 11s
nf-test (modules/nf-core/pairtools/merge, docker_self_hosted)
2m 14s
nf-test (modules/nf-core/pairtools/merge, singularity)
2m 7s
nf-test (modules/nf-core/pairtools/flip, conda)
3m 49s
nf-test (modules/nf-core/pairtools/flip, docker_self_hosted)
1m 34s
nf-test (modules/nf-core/pairtools/flip, singularity)
3m 29s
nf-test (modules/nf-core/verifybamid/verifybamid, conda)
3m 13s
nf-test (modules/nf-core/verifybamid/verifybamid, docker_self_hosted)
1m 35s
nf-test (modules/nf-core/verifybamid/verifybamid, singularity)
55s
nf-test (modules/nf-core/vt/decompose, docker_self_hosted)
1m 18s
nf-test (modules/nf-core/vt/decompose, singularity)
1m 16s
nf-test (modules/nf-core/ucsc/gtftogenepred, conda)
2m 22s
nf-test (modules/nf-core/ucsc/gtftogenepred, docker_self_hosted)
1m 38s
nf-test (modules/nf-core/ucsc/gtftogenepred, singularity)
1m 8s
nf-test (modules/nf-core/samtools/getrg, conda)
2m 42s
nf-test (modules/nf-core/samtools/getrg, docker_self_hosted)
1m 25s
nf-test (modules/nf-core/samtools/getrg, singularity)
1m 46s
nf-test (modules/nf-core/ncbigenomedownload, conda)
3m 45s
nf-test (modules/nf-core/ncbigenomedownload, docker_self_hosted)
1m 21s
nf-test (modules/nf-core/ncbigenomedownload, singularity)
2m 26s
nf-test (modules/nf-core/rtgtools/pedfilter, conda)
4m 15s
nf-test (modules/nf-core/rtgtools/pedfilter, docker_self_hosted)
2m 56s
nf-test (modules/nf-core/rtgtools/pedfilter, singularity)
2m 19s
nf-test (modules/nf-core/scoary, conda)
4m 35s
nf-test (modules/nf-core/scoary, docker_self_hosted)
2m 51s
nf-test (modules/nf-core/scoary, singularity)
3m 40s
nf-test (modules/nf-core/ucsc/bigwigaverageoverbed, conda)
2m 36s
nf-test (modules/nf-core/ucsc/bigwigaverageoverbed, docker_self_hosted)
1m 33s
nf-test (modules/nf-core/ucsc/bigwigaverageoverbed, singularity)
1m 40s
nf-test (modules/nf-core/adapterremovalfixprefix, conda)
3m 56s
nf-test (modules/nf-core/adapterremovalfixprefix, docker_self_hosted)
2m 27s
nf-test (modules/nf-core/adapterremovalfixprefix, singularity)
2m 4s
nf-test (modules/nf-core/pairtools/dedup, conda)
3m 52s
nf-test (modules/nf-core/pairtools/dedup, docker_self_hosted)
1m 35s
nf-test (modules/nf-core/pairtools/dedup, singularity)
2m 8s
nf-test (subworkflows/nf-core/bam_qc_picard, conda)
9m 18s
nf-test (subworkflows/nf-core/bam_qc_picard, docker_self_hosted)
4m 15s
nf-test (subworkflows/nf-core/bam_qc_picard, singularity)
4m 28s
nf-test (modules/nf-core/multiqc, conda)
9m 3s
nf-test (modules/nf-core/multiqc, docker_self_hosted)
3m 55s
nf-test (modules/nf-core/multiqc, singularity)
5m 43s
nf-test (modules/nf-core/sambamba/flagstat, conda)
3m 15s
nf-test (modules/nf-core/sambamba/flagstat, docker_self_hosted)
1m 0s
nf-test (modules/nf-core/sambamba/flagstat, singularity)
1m 8s
nf-test (modules/nf-core/goleft/indexcov, conda)
3m 28s
nf-test (modules/nf-core/goleft/indexcov, docker_self_hosted)
2m 17s
nf-test (modules/nf-core/goleft/indexcov, singularity)
2m 18s
nf-test (modules/nf-core/sambamba/markdup, conda)
2m 33s
nf-test (modules/nf-core/sambamba/markdup, docker_self_hosted)
1m 38s
nf-test (modules/nf-core/sambamba/markdup, singularity)
1m 10s
nf-test (modules/nf-core/pairtools/stats, conda)
3m 33s
nf-test (modules/nf-core/pairtools/stats, docker_self_hosted)
2m 13s
nf-test (modules/nf-core/pairtools/stats, singularity)
2m 22s
nf-test (modules/nf-core/ngmerge, conda)
3m 13s
nf-test (modules/nf-core/ngmerge, docker_self_hosted)
58s
nf-test (modules/nf-core/ngmerge, singularity)
1m 9s
nf-test (modules/nf-core/fastqc, conda)
9m 32s
nf-test (modules/nf-core/fastqc, docker_self_hosted)
5m 36s
nf-test (modules/nf-core/fastqc, singularity)
4m 59s
nf-test (modules/nf-core/samtools/depth, conda)
3m 43s
nf-test (modules/nf-core/samtools/depth, docker_self_hosted)
1m 17s
nf-test (modules/nf-core/samtools/depth, singularity)
2m 15s
nf-test (subworkflows/nf-core/utils_nextflow_pipeline, conda)
3m 37s
nf-test (subworkflows/nf-core/utils_nextflow_pipeline, docker_self_hosted)
2m 41s
nf-test (subworkflows/nf-core/utils_nextflow_pipeline, singularity)
3m 0s
nf-test (subworkflows/nf-core/bam_subsampledepth_samtools, conda)
3m 15s
nf-test (subworkflows/nf-core/bam_subsampledepth_samtools, docker_self_hosted)
1m 18s
nf-test (subworkflows/nf-core/bam_subsampledepth_samtools, singularity)
2m 0s
nf-test (modules/nf-core/vsearch/dereplicate, conda)
3m 37s
nf-test (modules/nf-core/vsearch/dereplicate, docker_self_hosted)
1m 5s
nf-test (modules/nf-core/vsearch/dereplicate, singularity)
1m 23s
nf-test (modules/nf-core/purgedups/pbcstat, conda)
5m 3s
nf-test (modules/nf-core/purgedups/pbcstat, docker_self_hosted)
1m 28s
nf-test (modules/nf-core/purgedups/pbcstat, singularity)
2m 14s
nf-test (modules/nf-core/purgedups/splitfa, conda)
4m 30s
nf-test (modules/nf-core/purgedups/splitfa, docker_self_hosted)
1m 25s
nf-test (modules/nf-core/purgedups/splitfa, singularity)
1m 38s
nf-test (modules/nf-core/picard/positionbaseddownsamplesam, conda)
3m 32s
nf-test (modules/nf-core/picard/positionbaseddownsamplesam, docker_self_hosted)
3m 55s
nf-test (modules/nf-core/picard/positionbaseddownsamplesam, singularity)
3m 11s
nf-test (modules/nf-core/arriba/download, conda)
4m 18s
nf-test (modules/nf-core/arriba/download, docker_self_hosted)
4m 23s
nf-test (modules/nf-core/arriba/download, singularity)
8m 51s
nf-test (modules/nf-core/pairtools/select, conda)
3m 49s
nf-test (modules/nf-core/pairtools/select, docker_self_hosted)
1m 33s
nf-test (modules/nf-core/pairtools/select, singularity)
3m 20s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, conda)
10m 59s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, docker_self_hosted)
5m 26s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, singularity)
6m 15s
nf-test (modules/nf-core/samtools/fasta, conda)
3m 57s
nf-test (modules/nf-core/samtools/fasta, docker_self_hosted)
1m 14s
nf-test (modules/nf-core/samtools/fasta, singularity)
1m 49s
nf-test (modules/nf-core/nextclade/datasetget, conda)
3m 12s
nf-test (modules/nf-core/nextclade/datasetget, docker_self_hosted)
1m 32s
nf-test (modules/nf-core/nextclade/datasetget, singularity)
1m 11s
nf-test (modules/nf-core/shasta, conda)
3m 41s
nf-test (modules/nf-core/shasta, docker_self_hosted)
1m 48s
nf-test (modules/nf-core/shasta, singularity)
1m 51s
nf-test (modules/nf-core/pairix, conda)
2m 42s
nf-test (modules/nf-core/pairix, docker_self_hosted)
1m 4s
nf-test (modules/nf-core/pairix, singularity)
1m 55s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, conda)
16m 4s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, docker_self_hosted)
10m 40s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, singularity)
11m 21s
nf-test (modules/nf-core/picard/collectwgsmetrics, conda)
7m 20s
nf-test (modules/nf-core/picard/collectwgsmetrics, docker_self_hosted)
2m 58s
nf-test (modules/nf-core/picard/collectwgsmetrics, singularity)
6m 31s
nf-test (modules/nf-core/picard/mergesamfiles, conda)
3m 9s
nf-test (modules/nf-core/picard/mergesamfiles, docker_self_hosted)
2m 50s
nf-test (modules/nf-core/picard/mergesamfiles, singularity)
5m 14s
nf-test (modules/nf-core/ichorcna/run, conda)
14m 2s
nf-test (modules/nf-core/ichorcna/run, docker_self_hosted)
6m 44s
nf-test (modules/nf-core/ichorcna/run, singularity)
19m 27s
nf-test (modules/nf-core/arcashla/extract, conda)
4m 43s
nf-test (modules/nf-core/arcashla/extract, docker_self_hosted)
2m 13s
nf-test (modules/nf-core/arcashla/extract, singularity)
2m 27s
nf-test (modules/nf-core/vsearch/usearchglobal, conda)
3m 14s
nf-test (modules/nf-core/vsearch/usearchglobal, docker_self_hosted)
2m 0s
nf-test (modules/nf-core/vsearch/usearchglobal, singularity)
1m 25s
nf-test (modules/nf-core/rapidnj, conda)
3m 30s
nf-test (modules/nf-core/rapidnj, docker_self_hosted)
1m 48s
nf-test (modules/nf-core/rapidnj, singularity)
2m 4s
nf-test (modules/nf-core/tiara/tiara, conda)
3m 40s
nf-test (modules/nf-core/tiara/tiara, docker_self_hosted)
2m 34s
nf-test (modules/nf-core/tiara/tiara, singularity)
5m 23s
nf-test (modules/nf-core/yahs, conda)
2m 32s
nf-test (modules/nf-core/yahs, docker_self_hosted)
52s
nf-test (modules/nf-core/yahs, singularity)
55s
nf-test (modules/nf-core/ichorcna/createpon, conda)
18m 6s
nf-test (modules/nf-core/ichorcna/createpon, docker_self_hosted)
6m 26s
nf-test (modules/nf-core/ichorcna/createpon, singularity)
15m 49s
nf-test (modules/nf-core/pints/caller, conda)
26m 41s
nf-test (modules/nf-core/pints/caller, docker_self_hosted)
24m 55s
nf-test (modules/nf-core/pints/caller, singularity)
24m 45s
confirm-pass
1s
10h 48m 37s