Add module and subworkflow mirtop #14842
Triggered via pull request
September 5, 2024 12:58
atrigila
Status
Cancelled
Total duration
6m 23s
Artifacts
–
test.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
Annotations
45 errors and 3 warnings
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prettier
Process completed with exit code 1.
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nf-core-lint-modules (mirtop/export)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-core-lint-modules (mirtop/export)
The operation was canceled.
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nf-core-lint-modules (bam_stats_mirna_mirtop)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-core-lint-modules (bam_stats_mirna_mirtop)
The operation was canceled.
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nf-core-lint-modules (mirtop/counts)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-core-lint-modules (mirtop/counts)
The operation was canceled.
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pytest (cellrangerarc/mkref, singularity)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-core-lint-modules (mirtop/stats)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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pytest (cellrangerarc/mkref, singularity)
The operation was canceled.
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nf-core-lint-modules (mirtop/stats)
The operation was canceled.
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nf-test (modules/nf-core/mirtop/counts, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (modules/nf-core/mirtop/counts, docker_self_hosted)
The operation was canceled.
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nf-test (modules/nf-core/mirtop/export, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (modules/nf-core/mirtop/export, docker_self_hosted)
The operation was canceled.
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nf-test (modules/nf-core/mirtop/stats, singularity)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (modules/nf-core/mirtop/stats, singularity)
The operation was canceled.
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nf-test (modules/nf-core/mirtop/export, singularity)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (modules/nf-core/mirtop/export, singularity)
The operation was canceled.
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nf-test (subworkflows/nf-core/bam_stats_mirna_mirtop, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (subworkflows/nf-core/bam_stats_mirna_mirtop, docker_self_hosted)
The operation was canceled.
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nf-test (modules/nf-core/mirtop/counts, singularity)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (modules/nf-core/mirtop/counts, singularity)
The operation was canceled.
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nf-test (modules/nf-core/mirtop/gff, singularity)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (modules/nf-core/mirtop/gff, singularity)
The operation was canceled.
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nf-test (modules/nf-core/mirtop/stats, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (modules/nf-core/mirtop/stats, docker_self_hosted)
The operation was canceled.
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nf-test (modules/nf-core/mirtop/gff, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (modules/nf-core/mirtop/gff, docker_self_hosted)
The operation was canceled.
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pytest (cellrangerarc/mkref, docker)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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pytest (cellrangerarc/mkref, docker)
The operation was canceled.
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nf-test (subworkflows/nf-core/bam_stats_mirna_mirtop, conda)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (subworkflows/nf-core/bam_stats_mirna_mirtop, conda)
The operation was canceled.
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nf-test (modules/nf-core/mirtop/gff, conda)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (modules/nf-core/mirtop/export, conda)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (modules/nf-core/mirtop/gff, conda)
The operation was canceled.
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nf-test (modules/nf-core/mirtop/export, conda)
The operation was canceled.
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nf-test (modules/nf-core/mirtop/stats, conda)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (modules/nf-core/mirtop/stats, conda)
The operation was canceled.
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nf-test (subworkflows/nf-core/bam_stats_mirna_mirtop, singularity)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (subworkflows/nf-core/bam_stats_mirna_mirtop, singularity)
The operation was canceled.
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nf-test (modules/nf-core/mirtop/counts, conda)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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nf-test (modules/nf-core/mirtop/counts, conda)
The operation was canceled.
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nf-core-lint-modules (mirtop/gff)
Canceling since a higher priority waiting request for 'Run tests-6587' exists
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confirm-pass
Process completed with exit code 1.
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pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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nf-core-lint-modules (mirtop/gff)
Runner ubuntu-2204-x64_i-00010e687e693d577 did not respond to a cancelation request with 00:05:00.
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