update JSON schema for subworkflows meta.yml #15653
mirpedroltest.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
Annotations
27 errors and 2 warnings
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pre-commit
Process completed with exit code 1.
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pytest (subworkflows/bam_cnv_wisecondorx, conda)
Process completed with exit code 1.
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pytest (subworkflows/bam_cnv_wisecondorx, conda)
Process completed with exit code 1.
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pytest (subworkflows/bam_docounts_contamination_angsd, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/bam_docounts_contamination_angsd, conda)
Process completed with exit code 1.
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pytest (subworkflows/bam_docounts_contamination_angsd, conda)
Process completed with exit code 1.
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pytest (subworkflows/bam_cnv_wisecondorx, docker)
Process completed with exit code 1.
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pytest (subworkflows/bam_cnv_wisecondorx, docker)
Process completed with exit code 1.
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pytest (subworkflows/bam_markduplicates_samtools, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/bam_markduplicates_samtools, conda)
Process completed with exit code 1.
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pytest (subworkflows/bam_markduplicates_samtools, conda)
Process completed with exit code 1.
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pytest (subworkflows/bam_ngscheckmate, conda)
Process completed with exit code 1.
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pytest (subworkflows/bam_ngscheckmate, conda)
Process completed with exit code 1.
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pytest (subworkflows/bam_ngscheckmate, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/bam_cnv_wisecondorx, singularity)
Process completed with exit code 1.
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pytest (subworkflows/bam_cnv_wisecondorx, singularity)
Process completed with exit code 1.
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pytest (subworkflows/bam_ngscheckmate, docker)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
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pytest (subworkflows/bam_ngscheckmate, docker)
The operation was canceled.
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nf-test (subworkflows/nf-core/bam_rseqc, conda)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
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nf-test (subworkflows/nf-core/bam_rseqc, conda)
The operation was canceled.
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nf-test (subworkflows/nf-core/bam_create_som_pon_gatk, docker_self_hosted)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
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nf-test (subworkflows/nf-core/bam_create_som_pon_gatk, docker_self_hosted)
The operation was canceled.
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nf-test (subworkflows/nf-core/bam_create_som_pon_gatk, conda)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
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nf-test (subworkflows/nf-core/bam_create_som_pon_gatk, conda)
The operation was canceled.
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nf-test (subworkflows/nf-core/bam_qc_picard, conda)
Process completed with exit code 1.
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nf-test (subworkflows/nf-core/bam_create_som_pon_gatk, singularity)
The self-hosted runner: ubuntu-2204-x64_i-00aa367693fba1212 lost communication with the server. Verify the machine is running and has a healthy network connection. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.
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confirm-pass
Process completed with exit code 1.
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pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | |
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logs-conda-
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22.5 KB |
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logs-docker-
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48.2 KB |
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logs-singularity-
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48.3 KB |
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