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update bismark apps #15892

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update bismark apps

update bismark apps #15892

Triggered via pull request October 12, 2024 18:29
@sateeshperisateeshperi
opened #6774
fix/bismark-genomeprep
Status Failure
Total duration 11m 49s
Artifacts –

test.yml

on: pull_request
nf-test-changes
32s
nf-test-changes
pytest-changes
4s
pytest-changes
prettier
35s
prettier
editorconfig
14s
editorconfig
pre-commit
1m 29s
pre-commit
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
confirm-pass
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16 errors and 2 warnings
nf-test (modules/nf-core/bismark/coverage2cytosine, docker_self_hosted)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/report, singularity)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/align, docker_self_hosted)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/summary, docker_self_hosted)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/report, docker_self_hosted)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/methylationextractor, docker_self_hosted)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/summary, singularity)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/methylationextractor, singularity)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/align, singularity)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/coverage2cytosine, singularity)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/summary, conda)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/coverage2cytosine, conda)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/align, conda)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/report, conda)
Process completed with exit code 1.
nf-test (modules/nf-core/bismark/methylationextractor, conda)
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.