build: Test a theory for gatk4 packaging bug

nf-core · Feb 26, 2024 · 116adce · 116adce
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diff --git a/modules/nf-core/gatk4/germlinecnvcaller/environment.yml b/modules/nf-core/gatk4/germlinecnvcaller/environment.yml
@@ -3,3 +3,8 @@ channels:
   - conda-forge
   - bioconda
   - defaults
+dependencies:
+  - bioconda::gatk4=4.5.0.0
+  - pip:
+      # https://swift.rc.nectar.org.au/v1/AUTH_377/public/gatkPythonPackageArchive.zip
+      - gatkPythonPackageArchive.zip
diff --git a/modules/nf-core/gatk4/germlinecnvcaller/gatkPythonPackageArchive.zip b/modules/nf-core/gatk4/germlinecnvcaller/gatkPythonPackageArchive.zip