Conda: Remove defaults. Batch 3

modules/nf-core/gfaffix/environment.yml

@@ -2,6 +2,5 @@ name: gfaffix
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gfaffix=0.1.5

modules/nf-core/gfastats/environment.yml

@@ -2,6 +2,5 @@ name: gfastats
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gfastats=1.3.6

modules/nf-core/gfatools/gfa2fa/environment.yml

@@ -2,6 +2,5 @@ name: gfatools_gfa2fa
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gfatools=0.5

modules/nf-core/gfatools/stat/environment.yml

@@ -2,6 +2,5 @@ name: gfatools_stat
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gfatools=0.5

modules/nf-core/gffcompare/environment.yml

@@ -2,6 +2,5 @@ name: gffcompare
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gffcompare=0.12.6

modules/nf-core/gffread/environment.yml

@@ -2,6 +2,5 @@ name: gffread
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gffread=0.12.7

modules/nf-core/gget/gget/environment.yml

@@ -2,6 +2,5 @@ name: gget_gget
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gget=0.27.2

modules/nf-core/glimpse/chunk/environment.yml

@@ -2,6 +2,5 @@ name: glimpse_chunk
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::glimpse-bio=1.1.1

modules/nf-core/glimpse/concordance/environment.yml

@@ -2,6 +2,5 @@ name: glimpse_concordance
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::glimpse-bio=1.1.1

modules/nf-core/glimpse/ligate/environment.yml

@@ -2,6 +2,5 @@ name: glimpse_ligate
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::glimpse-bio=1.1.1

modules/nf-core/glimpse/phase/environment.yml

@@ -2,6 +2,5 @@ name: glimpse_phase
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::glimpse-bio=1.1.1

modules/nf-core/glimpse/sample/environment.yml

@@ -2,6 +2,5 @@ name: glimpse_sample
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::glimpse-bio=1.1.1

modules/nf-core/glimpse2/chunk/environment.yml

@@ -2,6 +2,5 @@ name: glimpse2_chunk
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::glimpse-bio=2.0.1

modules/nf-core/glimpse2/concordance/environment.yml

@@ -2,6 +2,5 @@ name: glimpse2_concordance
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::glimpse-bio=2.0.1

modules/nf-core/glimpse2/ligate/environment.yml

@@ -2,6 +2,5 @@ name: glimpse2_ligate
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::glimpse-bio=2.0.1

modules/nf-core/glimpse2/phase/environment.yml

@@ -2,6 +2,5 @@ name: glimpse2_phase
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::glimpse-bio=2.0.1

modules/nf-core/glimpse2/splitreference/environment.yml

@@ -2,6 +2,5 @@ name: glimpse2_splitreference
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::glimpse-bio=2.0.1

modules/nf-core/glnexus/environment.yml

@@ -2,6 +2,5 @@ name: glnexus
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::glnexus=1.4.1

modules/nf-core/gnu/sort/environment.yml

@@ -4,6 +4,5 @@ name: gnu_sort
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - conda-forge::coreutils=9.3

modules/nf-core/gnu/split/environment.yml

@@ -4,6 +4,5 @@ name: gnu_split
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - conda-forge::coreutils=9.3

modules/nf-core/goat/taxonsearch/environment.yml

@@ -2,6 +2,5 @@ name: goat_taxonsearch
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::goat=0.2.5

modules/nf-core/goleft/indexcov/environment.yml

@@ -2,6 +2,5 @@ name: goleft_indexcov
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::goleft=0.2.4

modules/nf-core/goleft/indexsplit/environment.yml

@@ -2,6 +2,5 @@ name: goleft_indexsplit
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::goleft=0.2.4

modules/nf-core/gprofiler2/gost/environment.yml

@@ -2,7 +2,6 @@ name: gprofiler2_gost
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - conda-forge::r-ggplot2=3.4.3
   - conda-forge::r-gprofiler2=0.2.2

modules/nf-core/grabix/check/environment.yml

@@ -2,6 +2,5 @@ name: grabix_check
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::grabix=0.1.8

modules/nf-core/graphmap2/align/environment.yml

@@ -2,6 +2,5 @@ name: graphmap2_align
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::graphmap=0.6.3

modules/nf-core/graphmap2/index/environment.yml

@@ -2,6 +2,5 @@ name: graphmap2_index
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::graphmap=0.6.3

modules/nf-core/graphtyper/genotype/environment.yml

@@ -2,6 +2,5 @@ name: graphtyper_genotype
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::graphtyper=2.7.2

modules/nf-core/graphtyper/vcfconcatenate/environment.yml

@@ -2,6 +2,5 @@ name: graphtyper_vcfconcatenate
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::graphtyper=2.7.2

modules/nf-core/gridss/gridss/environment.yml

@@ -2,6 +2,5 @@ name: gridss_gridss
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gridss=2.13.2

modules/nf-core/gsea/gsea/environment.yml

@@ -2,6 +2,5 @@ name: gsea_gsea
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gsea=4.3.2

modules/nf-core/gstama/collapse/environment.yml

@@ -2,6 +2,5 @@ name: GSTAMA_COLLAPSE
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gs-tama=1.0.3

modules/nf-core/gstama/merge/environment.yml

@@ -2,6 +2,5 @@ name: gstama_merge
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gs-tama=1.0.3

modules/nf-core/gstama/polyacleanup/environment.yml

@@ -2,6 +2,5 @@ name: gstama_polyacleanup
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gs-tama=1.0.3

modules/nf-core/gt/gff3/environment.yml

@@ -4,6 +4,5 @@ name: "gt_gff3"
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - "bioconda::genometools-genometools=1.6.5"

modules/nf-core/gt/gff3validator/environment.yml

@@ -4,6 +4,5 @@ name: "gt_gff3validator"
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - "bioconda::genometools-genometools=1.6.5"

modules/nf-core/gt/ltrharvest/environment.yml

@@ -4,6 +4,5 @@ name: "gt_ltrharvest"
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - "bioconda::genometools-genometools=1.6.5"

modules/nf-core/gt/stat/environment.yml

@@ -4,6 +4,5 @@ name: "gt_stat"
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - "bioconda::genometools-genometools=1.6.5"

modules/nf-core/gt/suffixerator/environment.yml

@@ -4,6 +4,5 @@ name: "gt_suffixerator"
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - "bioconda::genometools-genometools=1.6.5"

modules/nf-core/gtdbtk/classifywf/environment.yml

@@ -2,6 +2,5 @@ name: gtdbtk_classifywf
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gtdbtk=2.4.0

modules/nf-core/gtfsort/environment.yml

@@ -4,6 +4,5 @@ name: "gtfsort"
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - "bioconda::gtfsort=0.2.2"

modules/nf-core/gubbins/environment.yml

@@ -2,6 +2,5 @@ name: gubbins
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gubbins=3.0.0

modules/nf-core/gunc/downloaddb/environment.yml

@@ -2,6 +2,5 @@ name: gunc_downloaddb
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gunc=1.0.5

modules/nf-core/gunc/mergecheckm/environment.yml

@@ -2,6 +2,5 @@ name: gunc_mergecheckm
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gunc=1.0.5

modules/nf-core/gunc/run/environment.yml

@@ -2,6 +2,5 @@ name: gunc_run
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gunc=1.0.5

modules/nf-core/gunzip/environment.yml

@@ -2,6 +2,5 @@ name: gunzip
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - conda-forge::sed=4.7

modules/nf-core/gvcftools/extractvariants/environment.yml

@@ -2,6 +2,5 @@ name: gvcftools_extractvariants
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::gvcftools=0.17.0

modules/nf-core/hamronization/abricate/environment.yml

@@ -2,6 +2,5 @@ name: hamronization_abricate
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::hamronization=1.1.4

modules/nf-core/hamronization/amrfinderplus/environment.yml

@@ -2,6 +2,5 @@ name: hamronization_amrfinderplus
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::hamronization=1.1.4

modules/nf-core/hamronization/deeparg/environment.yml

@@ -2,6 +2,5 @@ name: hamronization_deeparg
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::hamronization=1.1.4

modules/nf-core/hamronization/fargene/environment.yml

@@ -2,6 +2,5 @@ name: hamronization_fargene
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::hamronization=1.1.4

modules/nf-core/hamronization/rgi/environment.yml

@@ -2,6 +2,5 @@ name: hamronization_rgi
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::hamronization=1.1.4

modules/nf-core/hamronization/summarize/environment.yml

@@ -2,6 +2,5 @@ name: hamronization_summarize
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::hamronization=1.1.4

modules/nf-core/hapibd/environment.yml

@@ -2,6 +2,5 @@ name: hapibd
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::hap-ibd=1.0.rev20May22.818

modules/nf-core/haplocheck/environment.yml

@@ -2,6 +2,5 @@ name: haplocheck
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::haplocheck=1.3.3

modules/nf-core/haplogrep2/classify/environment.yml

@@ -2,6 +2,5 @@ name: haplogrep2_classify
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - bioconda::haplogrep=2.4.0

modules/nf-core/happy/ftxpy/environment.yml

@@ -4,6 +4,5 @@ name: "happy_ftxpy"
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - "bioconda::hap.py=0.3.15"