Added nf-test for bcftools/split

nf-core · Aug 26, 2024 · 641c44e · 641c44e
1 parent 13b1571
commit 641c44e
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Showing 6 changed files with 55 additions and 32 deletions.
diff --git a/modules/nf-core/bcftools/split/tests/main.nf.test b/modules/nf-core/bcftools/split/tests/main.nf.test
@@ -0,0 +1,40 @@
+
+nextflow_process {
+
+    name "Test Process BCFTOOLS_SPLIT"
+    script "../main.nf"
+    process "BCFTOOLS_SPLIT"
+
+    tag "modules"
+    tag "modules_nfcore"
+    tag "bcftools"
+    tag "bcftools/split"
+
+    test("test-bcftools-split") {
+
+        when {
+            process {
+                """
+                input[0] = [
+				    [ id:'test', single_end:false ], // meta map
+				    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/gvcf/test.genome.vcf.gz', checkIfExists: true),
+				    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/gvcf/test.genome.vcf.gz.tbi', checkIfExists: true)
+				]
+
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(
+					path(process.out.split_vcf[0][1]).vcf.variantsMD5,
+					process.out.versions
+					).match()
+				}
+            )
+        }
+    }
+
+}
diff --git a/modules/nf-core/bcftools/split/tests/main.nf.test.snap b/modules/nf-core/bcftools/split/tests/main.nf.test.snap
@@ -0,0 +1,15 @@
+{
+    "test-bcftools-split": {
+        "content": [
+            "ecf3973f634b7baa1c13e60bfb77a174",
+            [
+                "versions.yml:md5,a1c58d82f1e5c0fed394bfb865f57fd9"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-08-26T14:16:45.077115"
+    }
+}
diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml
@@ -88,9 +88,6 @@ bcftools/merge:
 bcftools/roh:
   - modules/nf-core/bcftools/roh/**
   - tests/modules/nf-core/bcftools/roh/**
-bcftools/split:
-  - modules/nf-core/bcftools/split/**
-  - tests/modules/nf-core/bcftools/split/**
 beagle5/beagle:
   - modules/nf-core/beagle5/beagle/**
   - tests/modules/nf-core/beagle5/beagle/**

diff --git a/tests/modules/nf-core/bcftools/split/main.nf b/tests/modules/nf-core/bcftools/split/main.nf
diff --git a/tests/modules/nf-core/bcftools/split/nextflow.config b/tests/modules/nf-core/bcftools/split/nextflow.config
diff --git a/tests/modules/nf-core/bcftools/split/test.yml b/tests/modules/nf-core/bcftools/split/test.yml