Added nf-test for bedtools/makewindows

modules/nf-core/bedtools/makewindows/tests/main.nf.test

@@ -0,0 +1,58 @@
+
+nextflow_process {
+
+    name "Test Process BEDTOOLS_MAKEWINDOWS"
+    script "../main.nf"
+    process "BEDTOOLS_MAKEWINDOWS"
+    config "./nextflow.config"
+
+    tag "modules"
+    tag "modules_nfcore"
+    tag "bedtools"
+    tag "bedtools/makewindows"
+
+    test("test-bedtools-makewindows-bed") {
+
+        when {
+            process {
+                """
+                input[0] = [
+				    [ id:'test2'],
+				    file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/bed/test.bed', checkIfExists: true)
+				]
+
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+
+    test("test-bedtools-makewindows-fai") {
+
+        when {
+            process {
+                """
+                input[0] = [
+				    [ id:'test2'],
+				    file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.fasta.fai', checkIfExists: true)
+				]
+
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+
+}

modules/nf-core/bedtools/makewindows/tests/main.nf.test.snap

@@ -0,0 +1,68 @@
+{
+    "test-bedtools-makewindows-fai": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test2"
+                        },
+                        "test2.bed:md5,622d1f62786fe4239b76c53168f21c54"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,f797078cc8b8bac7e6906685d4867be5"
+                ],
+                "bed": [
+                    [
+                        {
+                            "id": "test2"
+                        },
+                        "test2.bed:md5,622d1f62786fe4239b76c53168f21c54"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,f797078cc8b8bac7e6906685d4867be5"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-08-26T14:03:31.430455"
+    },
+    "test-bedtools-makewindows-bed": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test2"
+                        },
+                        "test2.bed:md5,0cf6ed2b6f470cd44a247da74ca4fe4e"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,f797078cc8b8bac7e6906685d4867be5"
+                ],
+                "bed": [
+                    [
+                        {
+                            "id": "test2"
+                        },
+                        "test2.bed:md5,0cf6ed2b6f470cd44a247da74ca4fe4e"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,f797078cc8b8bac7e6906685d4867be5"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-08-26T14:03:27.118372"
+    }
+}

modules/nf-core/bedtools/makewindows/tests/nextflow.config

@@ -0,0 +1,5 @@
+process {
+    withName: BEDTOOLS_MAKEWINDOWS {
+        ext.args = '-w 50 '
+    }
+}

tests/config/pytest_modules.yml

@@ -103,9 +103,6 @@ bedtools/intersect:
 bedtools/jaccard:
   - modules/nf-core/bedtools/jaccard/**
   - tests/modules/nf-core/bedtools/jaccard/**
-bedtools/makewindows:
-  - modules/nf-core/bedtools/makewindows/**
-  - tests/modules/nf-core/bedtools/makewindows/**
 bedtools/maskfasta:
   - modules/nf-core/bedtools/maskfasta/**
   - tests/modules/nf-core/bedtools/maskfasta/**