Added nf-test for ucsc/wigtobigwig

nf-core · Aug 26, 2024 · 8d75c08 · 8d75c08
1 parent 3fd7beb
commit 8d75c08
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Showing 6 changed files with 131 additions and 32 deletions.
diff --git a/modules/nf-core/ucsc/wigtobigwig/tests/main.nf.test b/modules/nf-core/ucsc/wigtobigwig/tests/main.nf.test
@@ -0,0 +1,59 @@
+
+nextflow_process {
+
+    name "Test Process UCSC_WIGTOBIGWIG"
+    script "../main.nf"
+    process "UCSC_WIGTOBIGWIG"
+
+    tag "modules"
+    tag "modules_nfcore"
+    tag "ucsc"
+    tag "ucsc/wigtobigwig"
+
+    test("test-ucsc-wigtobigwig") {
+
+        when {
+            process {
+                """
+                input[0] = [
+                    [ id:'test', single_end:false ], // meta map,
+				    file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/wig/test.wig.gz', checkIfExists: true)
+                ]
+				input[1] = file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.sizes', checkIfExists: true)
+
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+
+    test("test-ucsc-wigtobigwig-stub") {
+        options '-stub'
+        when {
+            process {
+                """
+                input[0] = [
+                    [ id:'test', single_end:false ], // meta map,
+				    file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/wig/test.wig.gz', checkIfExists: true)
+                ]
+				input[1] = file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.sizes', checkIfExists: true)
+
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+
+}
diff --git a/modules/nf-core/ucsc/wigtobigwig/tests/main.nf.test.snap b/modules/nf-core/ucsc/wigtobigwig/tests/main.nf.test.snap
@@ -0,0 +1,72 @@
+{
+    "test-ucsc-wigtobigwig": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.bw:md5,b64af7003665dc51fae958216b06ed95"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,e99b51033a14e1602fe195965a109feb"
+                ],
+                "bw": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.bw:md5,b64af7003665dc51fae958216b06ed95"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,e99b51033a14e1602fe195965a109feb"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-08-27T11:54:03.735102"
+    },
+    "test-ucsc-wigtobigwig-stub": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.bw:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,e99b51033a14e1602fe195965a109feb"
+                ],
+                "bw": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.bw:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,e99b51033a14e1602fe195965a109feb"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-08-27T11:54:07.924401"
+    }
+}
diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml
@@ -1326,9 +1326,6 @@ truvari/bench:
 ucsc/bedtobigbed:
   - modules/nf-core/ucsc/bedtobigbed/**
   - tests/modules/nf-core/ucsc/bedtobigbed/**
-ucsc/wigtobigwig:
-  - modules/nf-core/ucsc/wigtobigwig/**
-  - tests/modules/nf-core/ucsc/wigtobigwig/**
 ultra/align:
   - modules/nf-core/ultra/align/**
   - tests/modules/nf-core/ultra/align/**

diff --git a/tests/modules/nf-core/ucsc/wigtobigwig/main.nf b/tests/modules/nf-core/ucsc/wigtobigwig/main.nf
diff --git a/tests/modules/nf-core/ucsc/wigtobigwig/nextflow.config b/tests/modules/nf-core/ucsc/wigtobigwig/nextflow.config
diff --git a/tests/modules/nf-core/ucsc/wigtobigwig/test.yml b/tests/modules/nf-core/ucsc/wigtobigwig/test.yml