Added stub test

nf-core · Aug 26, 2024 · b9c06a9 · b9c06a9
1 parent 0e233a0
commit b9c06a9
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Showing 2 changed files with 69 additions and 3 deletions.
diff --git a/modules/nf-core/picard/scatterintervalsbyns/tests/main.nf.test b/modules/nf-core/picard/scatterintervalsbyns/tests/main.nf.test
@@ -16,15 +16,46 @@ nextflow_process {
             process {
                 """
                 input[0] = [
-				[ id:'test', single_end:false ], // meta map
+				    [ id:'test', single_end:false ], // meta map
 				    file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.fasta', checkIfExists: true)
 				]
 				input[1] = [
-				[ id:'test', single_end:false ], // meta map
+				    [ id:'test', single_end:false ], // meta map
 				    file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.fasta.fai', checkIfExists: true)
 				]
 				input[2] = [
-				[ id:'test', single_end:false ], // meta map
+				    [ id:'test', single_end:false ], // meta map
+				    file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.dict', checkIfExists: true)
+				]
+
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+
+    test("test-picard-scatterintervalsbyns-stub") {
+        options '-stub'
+
+        when {
+            process {
+                """
+                input[0] = [
+				    [ id:'test', single_end:false ], // meta map
+				    file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.fasta', checkIfExists: true)
+				]
+				input[1] = [
+				    [ id:'test', single_end:false ], // meta map
+				    file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.fasta.fai', checkIfExists: true)
+				]
+				input[2] = [
+				    [ id:'test', single_end:false ], // meta map
 				    file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.dict', checkIfExists: true)
 				]
 

diff --git a/modules/nf-core/picard/scatterintervalsbyns/tests/main.nf.test.snap b/modules/nf-core/picard/scatterintervalsbyns/tests/main.nf.test.snap
@@ -1,4 +1,39 @@
 {
+    "test-picard-scatterintervalsbyns-stub": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.interval_list:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,f92227dd1ef9396cd9ee2be53eb80459"
+                ],
+                "intervals": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.interval_list:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,f92227dd1ef9396cd9ee2be53eb80459"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-08-27T10:31:47.186455"
+    },
     "test-picard-scatterintervalsbyns": {
         "content": [
             {