build: Update to use commity.wave.seqera.io

nf-core · Jun 11, 2024 · c70900f · c70900f
1 parent 4b4f8e5
commit c70900f
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Showing 5 changed files with 11 additions and 14 deletions.
diff --git a/modules/nf-core/bowtie/align/environment.yml b/modules/nf-core/bowtie/align/environment.yml
@@ -1,8 +1,7 @@
-name: bowtie_align
+name: bowtie_samtools
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
-  - bioconda::bowtie=1.3.0
-  - bioconda::samtools=1.16.1
+  - bioconda::bowtie=1.3.1
+  - bioconda::samtools=1.20
diff --git a/modules/nf-core/bowtie/align/main.nf b/modules/nf-core/bowtie/align/main.nf
@@ -3,7 +3,7 @@ process BOWTIE_ALIGN {
     label 'process_high'
 
     conda "${moduleDir}/environment.yml"
-    container "nf-core/modules/bowtie_align:bowtie_align--d797c0ccd2d330fd"
+    container "community.wave.seqera.io/library/bowtie_samtools:772b3bee982574e4"
 
     input:
     tuple val(meta), path(reads)

diff --git a/modules/nf-core/bowtie/build/environment.yml b/modules/nf-core/bowtie/build/environment.yml
@@ -1,8 +1,7 @@
-name: bowtie_build
+name: bowtie_samtools
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
-  - bioconda::bowtie=1.3.0
-  - bioconda::samtools=1.16.1
+  - bioconda::bowtie=1.3.1
+  - bioconda::samtools=1.20
diff --git a/modules/nf-core/samtools/view/environment.yml b/modules/nf-core/samtools/view/environment.yml
@@ -1,10 +1,9 @@
-name: samtools_view
+name: htslib_samtools
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
-  # renovate: datasource=conda depName=bioconda/samtools
-  - bioconda::samtools=1.20
   # renovate: datasource=conda depName=bioconda/htslib
   - bioconda::htslib=1.20
+  # renovate: datasource=conda depName=bioconda/samtools
+  - bioconda::samtools=1.20
diff --git a/modules/nf-core/samtools/view/main.nf b/modules/nf-core/samtools/view/main.nf
@@ -3,7 +3,7 @@ process SAMTOOLS_VIEW {
     label 'process_low'
 
     conda "${moduleDir}/environment.yml"
-    container "nf-core/modules/samtools_view:samtools_view--033f764f39eb1f2d"
+    container "community.wave.seqera.io/library/htslib_samtools:1.20--11a4e6daa46930ec"
 
     input:
     tuple val(meta), path(input), path(index)