Added nf-test for ucsc/bigwigaverageoverbed (#6251)

* Added nf-test for ucsc/bigwigaverageoverbed * Update modules/nf-core/ucsc/bigwigaverageoverbed/tests/main.nf.test Co-authored-by: Joon Klaps <[email protected]> --------- Co-authored-by: Simon Pearce <[email protected]> Co-authored-by: Joon Klaps <[email protected]>
nf-core · Aug 23, 2024 · dc26c3e · dc26c3e
1 parent c1c2a77
commit dc26c3e
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Showing 6 changed files with 71 additions and 32 deletions.
diff --git a/modules/nf-core/ucsc/bigwigaverageoverbed/tests/main.nf.test b/modules/nf-core/ucsc/bigwigaverageoverbed/tests/main.nf.test
@@ -0,0 +1,36 @@
+
+nextflow_process {
+
+    name "Test Process UCSC_BIGWIGAVERAGEOVERBED"
+    script "../main.nf"
+    process "UCSC_BIGWIGAVERAGEOVERBED"
+
+    tag "modules"
+    tag "modules_nfcore"
+    tag "ucsc"
+    tag "ucsc/bigwigaverageoverbed"
+
+    test("sarscov2-bed-bigwig") {
+
+        when {
+            process {
+                """
+                input[0] = [
+				    [ id: 'test' ], // meta map
+				    [ file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/bed/test.bed', checkIfExists: true) ]
+				]
+				input[1] = file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/bigwig/test.bigwig', checkIfExists: true)
+
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+
+}
diff --git a/modules/nf-core/ucsc/bigwigaverageoverbed/tests/main.nf.test.snap b/modules/nf-core/ucsc/bigwigaverageoverbed/tests/main.nf.test.snap
@@ -0,0 +1,35 @@
+{
+    "test-ucsc-bigwigaverageoverbed": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test.tab:md5,d92334d90353577571eaf777933dce9b"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,6cd96f62eb8229c893477ae2fefc9a73"
+                ],
+                "tab": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test.tab:md5,d92334d90353577571eaf777933dce9b"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,6cd96f62eb8229c893477ae2fefc9a73"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-08-23T08:58:18.917224"
+    }
+}
diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml
@@ -1560,9 +1560,6 @@ truvari/bench:
 ucsc/bedtobigbed:
   - modules/nf-core/ucsc/bedtobigbed/**
   - tests/modules/nf-core/ucsc/bedtobigbed/**
-ucsc/bigwigaverageoverbed:
-  - modules/nf-core/ucsc/bigwigaverageoverbed/**
-  - tests/modules/nf-core/ucsc/bigwigaverageoverbed/**
 ucsc/gtftogenepred:
   - modules/nf-core/ucsc/gtftogenepred/**
   - tests/modules/nf-core/ucsc/gtftogenepred/**

diff --git a/tests/modules/nf-core/ucsc/bigwigaverageoverbed/main.nf b/tests/modules/nf-core/ucsc/bigwigaverageoverbed/main.nf
diff --git a/tests/modules/nf-core/ucsc/bigwigaverageoverbed/nextflow.config b/tests/modules/nf-core/ucsc/bigwigaverageoverbed/nextflow.config
diff --git a/tests/modules/nf-core/ucsc/bigwigaverageoverbed/test.yml b/tests/modules/nf-core/ucsc/bigwigaverageoverbed/test.yml