Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Mitohifi channel input #4254

Merged
merged 6 commits into from
Nov 2, 2023
Merged

Mitohifi channel input #4254

merged 6 commits into from
Nov 2, 2023

Conversation

ksenia-krasheninnikova
Copy link
Contributor

@ksenia-krasheninnikova ksenia-krasheninnikova commented Oct 31, 2023 •
edited
Loading

Changes to input according to

#4193
#4248

by @muffato and @mahesh-panchal

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

@muffato
Copy link
Member

muffato commented Nov 1, 2023

Manual rebase + merge to resolve the conflict with master

mahesh-panchal
mahesh-panchal approved these changes Nov 2, 2023
View reviewed changes
Copy link
Member

@mahesh-panchal mahesh-panchal left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thanks for updating.

@mahesh-panchal mahesh-panchal added this pull request to the merge queue Nov 2, 2023
Merged via the queue into master with commit 5bcbc0c Nov 2, 2023
9 checks passed
matrulda pushed a commit to matrulda/modules that referenced this pull request Nov 8, 2023
@ksenia-krasheninnikova @muffato @matrulda
Mitohifi channel input (nf-core#4254)
b9085d6 
* Main changes

* Add check for correct input parameters

* Code clean-up

* Conda is not supported

* Dropping the hyphen, as per @mahesh-panchal suggestion

---------

Co-authored-by: Ksenia Krasheninnikova <[email protected]>
Co-authored-by: Matthieu Muffato <[email protected]>
mirpedrol pushed a commit to mirpedrol/modules that referenced this pull request Nov 23, 2023
@ksenia-krasheninnikova @muffato @mirpedrol
Mitohifi channel input (nf-core#4254)
0518403 
* Main changes

* Add check for correct input parameters

* Code clean-up

* Conda is not supported

* Dropping the hyphen, as per @mahesh-panchal suggestion

---------

Co-authored-by: Ksenia Krasheninnikova <[email protected]>
Co-authored-by: Matthieu Muffato <[email protected]>
@muffato muffato deleted the mitohifi_channel_input branch November 29, 2023 21:09
maxulysse added a commit that referenced this pull request Jul 22, 2024
@matrulda @ksenia-krasheninnikova
@muffato @scorreard @asp8200 @koenbossers @JoseEspinosa @heuermh @maxulysse @edmundmiller @renovate @nvnieuwk @adamrtalbot @Aratz @gq1 @yumisims @DLBPointon @sateeshperi @mashehu @mahesh-panchal @vagkaratzas @pinin4fjords @laramiellindsey @nf-core-bot @Joon-Klaps @LouisLeNezet @KamilMaliszArdigen @kevinpryan @MarieLataretu @SPPearce @peterpru @rannick @kubranarci @fmalmeida @atrigila
New module: checkqc (#4158)
5848a1e 
* Add template module with nf-core with some modifications

* checkqc: Removed TODOs, added tests (need improvement), copy files when staging

* Use nf-tests for checkQC

* Change logic of mitohifi/mitohifi api (#4193)

* Code refactoring for mitohifi input

* Fix md5sum

* Fix md5sum for versions

* Bring back md5sum value

* Update md5sum again

* Remove md5sum

* Bring back versions.yml

* It looks like $HOME needs be writable in the container. Trying mounting it

* Add test for reads

* Update modules/nf-core/mitohifi/mitohifi/main.nf

Refactor the mitohifi command line

Co-authored-by: Solenne Correard <[email protected]>

* Fix md5sums

---------

Co-authored-by: Ksenia Krasheninnikova <[email protected]>
Co-authored-by: Matthieu Muffato <[email protected]>
Co-authored-by: Solenne Correard <[email protected]>

* Sentieon/tnfilter (#4208)

* Adding module sentieon/tnfilter

* WIP: CI-tests for sentieon/tnfilter. (test-data just local for now.)

* Skipping conda-based test of sentieon/tnfilter

* Remove avail_mem stuff.

* Fix description of output vcf

* Using test-data from nf-core test-datasets repo

* add tests for sentieon/tnfilter

* pycoqc: add nf-test (#4238)

* nf-test for pycoqc. snapshots for versions and json['All reads']

* tags.yml

* test naming conventions. Fix indentation. Add test for html output

---------

Co-authored-by: Jose Espinosa-Carrasco <[email protected]>

* Update seqkit/fx2tab to version 2.5.1 (#4240)

* FEAT: update bclconvert to 4.2.4 (#4253)

* update bclconvert to 4.2.4

* regenerate snapshot

* Add conda to renovate (#4216)

* ci(renovate): Change schedule to monthly and pinDigests

https://emmer.dev/blog/keep-docker-base-images-updated-with-renovate/#default-renovate-config

* ci(renovate): Add security PRs immediately

https://emmer.dev/blog/keep-docker-base-images-updated-with-renovate/#custom-renovate-config

* ci(renovate): Just use best-practices

https://docs.renovatebot.com/presets-config/#configbest-practices

* ci(renovate): Set PR hourly limit to 3

* ci(renovate): Add conda support

Ulthran/ShotgunUnifrac#22

* ci(renovate): Add pre-commit

* ci(renovate): Request modules instead of maintainers

* ci(renovate): Don't scan the meta.ymls

* chore(deps): update pre-commit hook python-jsonschema/check-jsonschema to v0.27.0 (#4256)

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>

* chore(deps): update pre-commit hook pre-commit/mirrors-prettier to v3 (#4257)

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>

* Fix conda declaration (#4252)

* new module picard/scatterintervalsbyns

* update annotsv to 3.3.6

* update installannotations

* fix all modules conda declaration

* chore(config): migrate renovate config (#4255)

chore(config): migrate config .github/renovate.json5

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>

* chore(deps): update docker.io/continuumio/miniconda3 docker tag to v22 (#4220)

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>

* Fix linting test not being run for modules with only nf-test tests (#4231)

* new module picard/scatterintervalsbyns

* update annotsv to 3.3.6

* update installannotations

* try to fix linting with nf-test

* small change to trigger tests

* fix if statement

* also test pytest

* remove nf-test exclude from linting

* try for a conda fix

* revert last commit

* Update .github/workflows/test.yml

Co-authored-by: Adam Talbot <[email protected]>

* temporarily reactivate pytest for vardictjava

* run fastp test

* revert test triggers

---------

Co-authored-by: Adam Talbot <[email protected]>

* Nf-test rtgtools/rocplot (#4200)

* new module picard/scatterintervalsbyns

* update annotsv to 3.3.6

* update installannotations

* nf-test rtgtools rocplot

* remove pytest tag

* update according to comments

* Update modules/nf-core/rtgtools/rocplot/tests/main.nf.test

Co-authored-by: Adrien Coulier <[email protected]>

* Update modules/nf-core/rtgtools/rocplot/tests/main.nf.test

* update conda declaration

---------

Co-authored-by: Adrien Coulier <[email protected]>

* samtools/merge - emit crai file when cram file created (#4258)

Emit crai file for CRAM file

* chore(deps): update biocontainers/chromap docker tag to v0.2.5 (#4214)

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>

* Use "error" rather than "exit 1", and removed `quay.io/` (#4248)

* We should use "error" rather than "exit 1"

* Fixed the syntax

* Removed the quay.io prefix since it is the default registry

* chore(deps): update biocontainers/goat docker tag to v0.2.5 (#4259)

* chore(deps): update biocontainers/goat docker tag to v0.2.5

* Version bump (across all 3 package systems)

* Fixed the type of the "taxon" parameter

* Updated the test md5

* Added me as a maintainer since GoaT is (partly) in my team

---------

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
Co-authored-by: Matthieu Muffato <[email protected]>

* change database sufix to nin which is more common in v5 and v4 database (#4245)

change ndb to nin

Co-authored-by: Damon-Lee Pointon <[email protected]>

* add nf-tests and snapshots for kallisto index & quant (#4250)

* add nf-tests and snapshots for kallisto index & quant

* rm kallisto tags from pytest_modules.yml

* Update modules/nf-core/kallisto/index/tests/main.nf.test

Co-authored-by: Adam Talbot <[email protected]>

* Update modules/nf-core/kallisto/quant/tests/main.nf.test

Co-authored-by: Adam Talbot <[email protected]>

* Update modules/nf-core/kallisto/quant/tests/main.nf.test

Co-authored-by: Adam Talbot <[email protected]>

* update kallisto quant

* Update modules/nf-core/kallisto/index/tests/main.nf.test

Co-authored-by: Adam Talbot <[email protected]>

* Update modules/nf-core/kallisto/quant/tests/main.nf.test

Co-authored-by: Adam Talbot <[email protected]>

* Update modules/nf-core/kallisto/quant/tests/main.nf.test

Co-authored-by: Adam Talbot <[email protected]>

* Update modules/nf-core/kallisto/quant/tests/main.nf.test

Co-authored-by: Adam Talbot <[email protected]>

* remove superfluous quote marks

* fix linting

---------

Co-authored-by: Adam Talbot <[email protected]>
Co-authored-by: mashehu <[email protected]>

* Update genomescope (#4267)

* Add Kmer coverage to module output

* Update test.yml

* Update modules/nf-core/genescopefk/meta.yml

Co-authored-by: Matthieu Muffato <[email protected]>

* Add bash directive

* Fix whitespace

---------

Co-authored-by: Matthieu Muffato <[email protected]>

* nf-test interproscan (#4269)

* Update busco (#4270)

* Move mandatory busco arg to input:

* bump busco version

* Update test.yml

* chore(deps): update biocontainers/bowtie2 docker tag to v2.4.5 (#4212)

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>

* chore(deps): update biocontainers/checkm-genome docker tag to v1.2.2 (#4213)

* chore(deps): update biocontainers/checkm-genome docker tag to v1.2.2

* Fix meta.yml and update singularity container

---------

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
Co-authored-by: Mahesh Binzer-Panchal <[email protected]>

* Mitohifi channel input (#4254)

* Main changes

* Add check for correct input parameters

* Code clean-up

* Conda is not supported

* Dropping the hyphen, as per @mahesh-panchal suggestion

---------

Co-authored-by: Ksenia Krasheninnikova <[email protected]>
Co-authored-by: Matthieu Muffato <[email protected]>

* chore(deps): Bump checkm-genome conda env (#4279)

Follow up to #4213

Co-authored-by: Mahesh Binzer-Panchal <[email protected]>

* chore(deps): update biocontainers/htseq docker tag to v2.0.3 (#4266)

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>

* Fix up kallisto (#4271)

* Try to fix up kallisto quant for real usage

* More kallisto fixes

* appease eclint

* Fix tests

* Add single-end config specifically

* try to fix kallisto nf-test

* Fix snapshot testing

* Tidy up config

* Just check the tsv

* syntax fix

* Revert "syntax fix"

This reverts commit 1becc26.

* Revert "Just check the tsv"

This reverts commit 7a9d272.

* Poor nf-test attempt

* [skip ci] Apply suggestions from code review

Co-authored-by: Sateesh_Peri <[email protected]>

* Last fix-up to tests, re-add paired

* Bump indexing to match quant in kallisto

* Bump kallisto index snapshot

---------

Co-authored-by: Sateesh_Peri <[email protected]>

* FIX: More coherence in all gatk4spark modules (#4282)

* fix gatk4 version

* rename and update all gatk4_<module>spark to gatk4spark_<module>

* update pytest_modules.yml

* fix meta.yml

* fix typo

* remove now useless exclude statements

* fix output path

* update multiqc to 1.17 in custom/dumpsoftwareversions (#4295)

* update multiqc to 1.17

* update snapshot

* update snapshot

* Rename utility subworkflows (#4268)

* Rename utility subworkflows

Changes:
 - nextflow_pipeline_utils -> utils_nextflow_pipeline
 - nfcore_pipeline_utils -> utils_nf_core_pipeline
 - nfvalidation_plugin_utils -> utils_nf_validatation_plugin

Names by @drpatelh

Not 100% on the names, I think it would be better if it said what they
_did_ rather than what they _are_. However, this is usable right now.
Better answers here please.

* Correct utility subworkflow tags

* Fixup comments

* config fix

* fix linting by faking pytest tests

* rename files

* update pytest_modules.yml

* fix fake pytest tests

---------

Co-authored-by: maxulysse <[email protected]>

* Ucsc/bedgraphtobigwig nftest (#4136)

* add nf-test and snapshot for umitools/extract

* remove pytest tag and add nf-test tag

* add nftest and snapshot for ucsc/bedgraphtobigwig

* Update modules/nf-core/ucsc/bedgraphtobigwig/tests/tags.yml

Co-authored-by: Adam Talbot <[email protected]>

* Update modules/nf-core/umitools/extract/tests/main.nf.test

Co-authored-by: Adam Talbot <[email protected]>

* [automated] Fix linting with Prettier

* Feat/fastp nf-test (#4028)

* init nf-test fastp

* add initial test fastp

* init html test fastp

* all tests fastp

* unequal files reads.fastq.gz

* finishing tests (finally)

* removing fastp from pytest

* fixing tag fastp

* adding the s

* adding relative path

---------

Co-authored-by: Maxime U Garcia <[email protected]>

* Rasusa nf test (#4081)

* Initial main.nf.test

* Full nf-test suite for module rasusa

* add "modules" tag to nf-test

Co-authored-by: Sateesh_Peri <[email protected]>

* Remove tags from tests/config/pytest_modules.yml

---------

Co-authored-by: Sateesh_Peri <[email protected]>

* Glimpse ligate nftest (#4048)

* Restart as new

* Delete pytest from config

* Update main.nf.test

* Glimpse chunk nftest (#4034)

* Add nf-test for glimpse_chunk

* Delete pytest for glimpse 1 not glimpse 2

* Update main.nf.test

* Added fq nf-tests (#4084)

* Added fq nf-tests

* Removed from pytest suite

* Test fix

---------

Co-authored-by: Maxime U Garcia <[email protected]>

* Feat/gunzip nf tests (#4103)

* add nf-test and snapshot for gunzip

* add modules/nf-core/gunzip/tests/tags.yml

* remove gunzip from tests/config/pytest_modules.yml for switch to nf-test

---------

Co-authored-by: Sateesh_Peri <[email protected]>

* added nf-test files for art/illumina (#4038)

* added nf-test files

- two tests (single- and paired-end)
- including two nextflow.configs for `ext.args`

* change tests topass on conda/mamba and singularity/docker

- due to gzip the fastq files will have different md5sums with different engines

* added art/illumina

- should trigger the nf-test CI

* extended tag to art/illumina

* fixed typos -.-

* fixed typo again

- missing quote

* renamed test.yml to tags.yml

* removed art/illumina

* added <tool> tag

* added nf-tests for -stub-run

---------

Co-authored-by: Sateesh_Peri <[email protected]>

* nf-test for module sourmash/sketch (#4104)

* nf-test for module sourmash/sketch

* add "sourmash" and "sourmash/sketch" tags

Co-authored-by: Sateesh_Peri <[email protected]>

---------

Co-authored-by: Sateesh_Peri <[email protected]>

* Renovate migrate (#4114)

* chore: Migrate renovate config

https://github.com/renovatebot/renovate/blob/main/docs/usage/config-validation.md
renovate-config-validator

* style: Add renovate to prettier ignore list

* Feat/picard_markduplicates nf-test  (#4096)

* picard nf-test init

* created first (failing)test

* tests succeeding

---------

Co-authored-by: Sateesh_Peri <[email protected]>

* Rename test.yml in getchromsizes (#4118)

* Rename test.yml and trigger pytest

* Update main.nf

* Feat/trimgalore nf-test (#4110)

* trimgalore nf-test init

* relative paths

* Update modules/nf-core/trimgalore/tests/main.nf.test

Co-authored-by: Sateesh_Peri <[email protected]>

---------

Co-authored-by: Sateesh_Peri <[email protected]>

* nf-test migration (#4113)

* nf-test for module fastqscan (#4097)

Co-authored-by: Sateesh_Peri <[email protected]>

* Mlst nf test and version bump to 2.23 (#4061)

* add nf-test to module mlst

* fix ownership for nf-test

* add "modules" tag to nf-test

Co-authored-by: Adam Talbot <[email protected]>

* Add module keywords to meta.yml

* Lint meta.yml

* Update to mlst version 2.23

* Update snap with new versions.yml after bump to v2.23

* Remove mlst from pytest_modules

---------

Co-authored-by: Maxime U Garcia <[email protected]>
Co-authored-by: Adam Talbot <[email protected]>
Co-authored-by: Sateesh_Peri <[email protected]>

* remove umitools/extract files

* Apply suggestions from code review

* remove umitools tests

* Apply suggestions from code review

* Update tests/config/pytest_modules.yml

---------

Co-authored-by: Maxime U Garcia <[email protected]>
Co-authored-by: Adam Talbot <[email protected]>
Co-authored-by: nf-core-bot <[email protected]>
Co-authored-by: Joon Klaps <[email protected]>
Co-authored-by: Koen Bossers <[email protected]>
Co-authored-by: Sateesh_Peri <[email protected]>
Co-authored-by: Louis LE NEZET <[email protected]>
Co-authored-by: KamilMaliszArdigen <[email protected]>
Co-authored-by: Kevin Ryan <[email protected]>
Co-authored-by: MarieLataretu <[email protected]>
Co-authored-by: Edmund Miller <[email protected]>
Co-authored-by: Simon Pearce <[email protected]>
Co-authored-by: Maxime U Garcia <[email protected]>

* Update missed renovate environments (#4296)

* chore(deps): Bump htseq conda env

* chore(deps): Update bowtie2 conda env

* ci(renovate): Assign CodeOwners to PRs

* ci(renovate): Move gitAuthor to main config

* ci(renovate): Try to add a header to stop the merge

* build: Add renovate comments to conda packages (#4298)

* Fix conda and renovate (#4299)

* ci(renovate): Remove docker hub

* ci(renovate): Update environment.yml regex

* ci(renovate): Copy regex from anaconda

https://github.com/anaconda/renovate-config/blob/176696853379d878a87575ba03b1b12fd29d24ac/default.json#L64-L71

* ci(renovate): Toss in pypi while we're here

* chore: Try adding :'s

* ci(renovate): Finally figured it out

https://github.com/anaconda/renovate-config/blob/176696853379d878a87575ba03b1b12fd29d24ac/docs/conda-environment.md?plain=1#L24
https://github.com/search?q=renovate%3A+datasource%3Dconda&type=code

* Add renovate config check (#4297)

* ci(renovate): Add pre-commit hook

* ci: Add a pre-commit workflow

* ci: Validate GitHub Workflows with pre-commit

* ci: Run pre-commit on only changed files

* add arriba download (#4280)

* initial commit

* add full module details and run tests

* fix linting

* fix linting and version number

* Update modules/nf-core/arriba/download/meta.yml

Co-authored-by: Annick Renevey <[email protected]>

---------

Co-authored-by: Annick Renevey <[email protected]>

* add agat/convertspgff2tsv module (#4265)

* add agat/convertspgff2tsv module

* correct output path

* update getting the version

* reverse other agat modules as not updated software

* correct md5sum

* Bug:  nf-test bam_sort_stats_samtools (#4190)

* adding bam bai

* Fix typo

* md5sum not text

* use correct tag name in tags.yml

* add missing tag

* add subworkflow tag

* copy pasta typo

---------

Co-authored-by: Maxime U Garcia <[email protected]>
Co-authored-by: Matthias Hörtenhuber <[email protected]>

* new module gridss GeneratePonBedpe (#4196)

* new module gridss GeneratePonBedpe

* Update main.nf

quay.io removed

* Update modules/nf-core/gridss/gridssgenerateponbedpe/main.nf

Co-authored-by: Nicolas Vannieuwkerke <[email protected]>

* Update modules/nf-core/gridss/gridssgenerateponbedpe/main.nf

Co-authored-by: Nicolas Vannieuwkerke <[email protected]>

* Update main.nf

fix input and output names
change meta names

* Update meta.yml

add meta 3 and meta 4 information

* Update main.nf

---------

Co-authored-by: Nicolas Vannieuwkerke <[email protected]>

* 3167 new module gridss gridss somatic filter (#4247)

* initial commit

* new module: gridss_somatic_filter

* Update main.nf

quay.io removed

* Update modules/nf-core/gridss/gridsssomaticfilter/main.nf

Co-authored-by: Nicolas Vannieuwkerke <[email protected]>

* Update modules/nf-core/gridss/gridsssomaticfilter/meta.yml

Co-authored-by: Nicolas Vannieuwkerke <[email protected]>

---------

Co-authored-by: Nicolas Vannieuwkerke <[email protected]>

* Added a meta map for the reference genome of minimap2 (#4285)

* Added a meta map for the reference genome of minimap2

* Added a meta map for the reference genome of minimap2

* Skip the Conda test since it produces a slightly different BAM file

* Add ngscheckmate bed file to test_data config (#4308)

* Diamond tools: nf-test, container update, stubs added, makedb meta added, gz input support, megan makedb test updated (#4194)

* diamond/makedb container, stub, meta, gz updated

* diamond/blastp container, stub, prefix, gz updated

* diamond/blastx container, stub, gz, megan module test upgraded

* nf-test diamond/makedb

* nf-test diamond/blastp

* nf-test diamond/blastx

* diamond blastp and blastx daa md5sums removed

* db input fix for blastp and blastx

* megan test makedb updated

* updated conda version in environment.yml

* correct conda paths per tool

* nf-tests with new conda envs and zipped tests for diamond tools

* diamond tools revision points

* db to tuple with meta

* blastp daa snapshot added

* revert snapshot

* revisions + debugging snapshots - conda failing

* daa check for existence instead of snapshot due to conda error

* blastp added choice for xml or tsv outputs other than the existing csv (#4197)

* blastp added choice for xml or tsv outputs other than the existing csv

* rerun skipped jobs

* nf-tests with new conda env + zipped file tests added for blast modules

* meta updated

* testing snapshots

* updated snapshots to work properly where possible

* Apply suggestions from code review

Co-authored-by: Sateesh_Peri <[email protected]>

* Remove trailing white space

* Apply suggestions from code review

Co-authored-by: Mahesh Binzer-Panchal <[email protected]>
Co-authored-by: Matthias Hörtenhuber <[email protected]>

* Handle Failed QC and add test for it

* Update modules/nf-core/checkqc/main.nf

Co-authored-by: Mahesh Binzer-Panchal <[email protected]>

* Update modules/nf-core/checkqc/main.nf

Co-authored-by: Mahesh Binzer-Panchal <[email protected]>

* Update to CheckQC v4.0.1

* Address lint errors and warnings

* update main.nf.test to new guidelines

* using an env.yaml for conda

* add community wave container

* update snapshot

* remove conda config

* add metamap

* update test and snapshot

* add yml for tracking versions

* skip checkqc conda profile

* fix linting

* Update test.yml

disable in nf-test not in pytest

* Update .github/workflows/test.yml

* add fixme note as requested in slack

---------

Co-authored-by: Ksenia <[email protected]>
Co-authored-by: Ksenia Krasheninnikova <[email protected]>
Co-authored-by: Matthieu Muffato <[email protected]>
Co-authored-by: Solenne Correard <[email protected]>
Co-authored-by: Anders Sune Pedersen <[email protected]>
Co-authored-by: Koen Bossers <[email protected]>
Co-authored-by: Jose Espinosa-Carrasco <[email protected]>
Co-authored-by: Michael L Heuer <[email protected]>
Co-authored-by: Maxime U Garcia <[email protected]>
Co-authored-by: Edmund Miller <[email protected]>
Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
Co-authored-by: Nicolas Vannieuwkerke <[email protected]>
Co-authored-by: Adam Talbot <[email protected]>
Co-authored-by: Adrien Coulier <[email protected]>
Co-authored-by: Guoying Qi <[email protected]>
Co-authored-by: YSims <[email protected]>
Co-authored-by: Damon-Lee Pointon <[email protected]>
Co-authored-by: Sateesh_Peri <[email protected]>
Co-authored-by: mashehu <[email protected]>
Co-authored-by: Mahesh Binzer-Panchal <[email protected]>
Co-authored-by: Matthieu Muffato <[email protected]>
Co-authored-by: Evangelos Karatzas <[email protected]>
Co-authored-by: Jonathan Manning <[email protected]>
Co-authored-by: Laramie Lindsey <[email protected]>
Co-authored-by: nf-core-bot <[email protected]>
Co-authored-by: Joon Klaps <[email protected]>
Co-authored-by: Louis LE NEZET <[email protected]>
Co-authored-by: KamilMaliszArdigen <[email protected]>
Co-authored-by: Kevin Ryan <[email protected]>
Co-authored-by: MarieLataretu <[email protected]>
Co-authored-by: Simon Pearce <[email protected]>
Co-authored-by: Maxime U Garcia <[email protected]>
Co-authored-by: Peter Pruisscher <[email protected]>
Co-authored-by: Annick Renevey <[email protected]>
Co-authored-by: Matthias Hörtenhuber <[email protected]>
Co-authored-by: Kübra Narcı <[email protected]>
Co-authored-by: nvnieuwk <[email protected]>
Co-authored-by: Felipe Marques de Almeida <[email protected]>
Co-authored-by: atrigila <[email protected]>
Co-authored-by: Felipe Marques de Almeida <[email protected]>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@mahesh-panchal mahesh-panchal mahesh-panchal approved these changes

@muffato muffato Awaiting requested review from muffato

@scorreard scorreard Awaiting requested review from scorreard

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
3 participants
@ksenia-krasheninnikova @muffato @mahesh-panchal