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Conda: Remove defaults. Batch 4 #5841

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Conda: Remove defaults. Batch 4 #5841

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1 change: 0 additions & 1 deletion modules/nf-core/methyldackel/mbias/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: methyldackel_mbias
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::methyldackel=0.6.0
1 change: 0 additions & 1 deletion modules/nf-core/midas/run/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: midas_run
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::midas=1.3.2
1 change: 0 additions & 1 deletion modules/nf-core/mindagap/duplicatefinder/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: "MINDAGAP_DUPLICATEFINDER"
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- "bioconda::mindagap=0.0.2"
1 change: 0 additions & 1 deletion modules/nf-core/mindagap/mindagap/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mindagap_mindagap
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mindagap=0.0.2
1 change: 0 additions & 1 deletion modules/nf-core/minia/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: minia
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::minia=3.2.6
1 change: 0 additions & 1 deletion modules/nf-core/miniasm/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: miniasm
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::miniasm=0.3_r179
1 change: 0 additions & 1 deletion modules/nf-core/minimap2/align/environment.yml
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Expand Up @@ -3,7 +3,6 @@ name: minimap2_align
channels:
- conda-forge
- bioconda
- defaults

dependencies:
- bioconda::htslib=1.20
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1 change: 0 additions & 1 deletion modules/nf-core/minimap2/index/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: minimap2_index
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::minimap2=2.28
1 change: 0 additions & 1 deletion modules/nf-core/miniprot/align/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: miniprot_align
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::miniprot=0.11=he4a0461_2
1 change: 0 additions & 1 deletion modules/nf-core/miniprot/index/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: miniprot_index
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::miniprot=0.11=he4a0461_2
1 change: 0 additions & 1 deletion modules/nf-core/miranda/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: miranda
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::miranda=3.3a
1 change: 0 additions & 1 deletion modules/nf-core/mlst/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mlst
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mlst=2.23.0
1 change: 0 additions & 1 deletion modules/nf-core/mmseqs/cluster/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mmseqs_cluster
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mmseqs2=15.6f452
1 change: 0 additions & 1 deletion modules/nf-core/mmseqs/createdb/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mmseqs_createdb
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mmseqs2=15.6f452
1 change: 0 additions & 1 deletion modules/nf-core/mmseqs/createindex/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mmseqs_createindex
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mmseqs2=15.6f452
1 change: 0 additions & 1 deletion modules/nf-core/mmseqs/createtsv/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mmseqs_createtsv
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mmseqs2=15.6f452
1 change: 0 additions & 1 deletion modules/nf-core/mmseqs/databases/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mmseqs_databases
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mmseqs2=15.6f452
1 change: 0 additions & 1 deletion modules/nf-core/mmseqs/easysearch/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mmseqs_easysearch
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mmseqs2=15.6f452
1 change: 0 additions & 1 deletion modules/nf-core/mmseqs/linclust/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mmseqs_linclust
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mmseqs2=15.6f452
1 change: 0 additions & 1 deletion modules/nf-core/mmseqs/search/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mmseqs_search
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mmseqs2=15.6f452
1 change: 0 additions & 1 deletion modules/nf-core/mmseqs/taxonomy/environment.yml
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Expand Up @@ -4,6 +4,5 @@ name: "mmseqs_taxonomy"
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- "bioconda::mmseqs2=15.6f452"
1 change: 0 additions & 1 deletion modules/nf-core/mmseqs/tsv2exprofiledb/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mmseqs_tsv2exprofiledb
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mmseqs2=15.6f452
1 change: 0 additions & 1 deletion modules/nf-core/mobsuite/recon/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mobsuite_recon
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mob_suite=3.0.3
1 change: 0 additions & 1 deletion modules/nf-core/modkit/pileup/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: modkit_pileup
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- ont-modkit=0.3.0
1 change: 0 additions & 1 deletion modules/nf-core/mosdepth/environment.yml
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Expand Up @@ -2,7 +2,6 @@ name: mosdepth
channels:
- conda-forge
- bioconda
- defaults
dependencies:
# renovate: datasource=conda depName=bioconda/mosdepth
- mosdepth=0.3.8
1 change: 0 additions & 1 deletion modules/nf-core/motus/downloaddb/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: motus_downloaddb
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::motus=3.0.3
1 change: 0 additions & 1 deletion modules/nf-core/motus/merge/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: motus_merge
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::motus=3.0.3
1 change: 0 additions & 1 deletion modules/nf-core/motus/profile/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: motus_profile
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::motus=3.0.3
1 change: 0 additions & 1 deletion modules/nf-core/msisensor/msi/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: msisensor_msi
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::msisensor=0.5
1 change: 0 additions & 1 deletion modules/nf-core/msisensor/scan/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: msisensor_scan
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::msisensor=0.5
1 change: 0 additions & 1 deletion modules/nf-core/msisensor2/msi/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: msisensor2_msi
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::msisensor2=0.1
1 change: 0 additions & 1 deletion modules/nf-core/msisensor2/scan/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: msisensor2_scan
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::msisensor2=0.1
1 change: 0 additions & 1 deletion modules/nf-core/msisensorpro/msisomatic/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: msisensorpro_msisomatic
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::msisensor-pro=1.2.0
1 change: 0 additions & 1 deletion modules/nf-core/msisensorpro/scan/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: msisensorpro_scan
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::msisensor-pro=1.2.0
1 change: 0 additions & 1 deletion modules/nf-core/mtmalign/align/environment.yml
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Expand Up @@ -2,7 +2,6 @@ name: mtmalign_align
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mtm-align=20220104
- conda-forge::pigz=2.8
1 change: 0 additions & 1 deletion modules/nf-core/mtnucratio/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mtnucratio
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mtnucratio=0.7
1 change: 0 additions & 1 deletion modules/nf-core/mudskipper/bulk/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mudskipper_bulk
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mudskipper=0.1.0
1 change: 0 additions & 1 deletion modules/nf-core/mudskipper/index/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mudskipper_index
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mudskipper=0.1.0
1 change: 0 additions & 1 deletion modules/nf-core/multiqc/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: multiqc
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::multiqc=1.22.2
1 change: 0 additions & 1 deletion modules/nf-core/multivcfanalyzer/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: multivcfanalyzer
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::multivcfanalyzer=0.85.2
1 change: 0 additions & 1 deletion modules/nf-core/mummer/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mummer
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mummer=3.23
1 change: 0 additions & 1 deletion modules/nf-core/muscle/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: muscle
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::muscle=3.8.1551
1 change: 0 additions & 1 deletion modules/nf-core/muscle5/super5/environment.yml
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Expand Up @@ -2,7 +2,6 @@ name: muscle5_super5
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::muscle=5.1
- conda-forge::pigz=2.8
1 change: 0 additions & 1 deletion modules/nf-core/mygene/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mygene
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mygene=3.2.2
1 change: 0 additions & 1 deletion modules/nf-core/mykrobe/predict/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: mykrobe_predict
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::mykrobe=0.11.0
1 change: 0 additions & 1 deletion modules/nf-core/nanocomp/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: nanocomp
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda:nanocomp=1.21.0
1 change: 0 additions & 1 deletion modules/nf-core/nanofilt/environment.yml
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Expand Up @@ -4,6 +4,5 @@ name: "nanofilt"
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- "bioconda::nanofilt=2.8.0"
1 change: 0 additions & 1 deletion modules/nf-core/nanolyse/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: nanolyse
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::nanolyse=1.2.0
1 change: 0 additions & 1 deletion modules/nf-core/nanomonsv/parse/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: nanomonsv_parse
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::nanomonsv=0.5.0
1 change: 0 additions & 1 deletion modules/nf-core/nanoplot/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: nanoplot
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::nanoplot=1.41.6
1 change: 0 additions & 1 deletion modules/nf-core/narfmap/align/environment.yml
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Expand Up @@ -2,7 +2,6 @@ name: narfmap_align
channels:
- conda-forge
- bioconda
- defaults
dependencies:
# renovate: datasource=conda depName=bioconda/narfmap
- narfmap=1.4.0
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1 change: 0 additions & 1 deletion modules/nf-core/narfmap/hashtable/environment.yml
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Expand Up @@ -2,7 +2,6 @@ name: narfmap_hashtable
channels:
- conda-forge
- bioconda
- defaults
dependencies:
# renovate: datasource=conda depName=bioconda/narfmap
- bioconda::narfmap=1.4.0
1 change: 0 additions & 1 deletion modules/nf-core/ncbigenomedownload/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: ncbigenomedownload
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::ncbi-genome-download=0.3.3
1 change: 0 additions & 1 deletion modules/nf-core/nextclade/datasetget/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: nextclade_datasetget
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::nextclade=2.12.0
1 change: 0 additions & 1 deletion modules/nf-core/nextclade/run/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: nextclade_run
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::nextclade=2.12.0
1 change: 0 additions & 1 deletion modules/nf-core/nextgenmap/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: nextgenmap
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::nextgenmap=0.5.5
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