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Conda: Remove defaults. Batch 6 #5843

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Conda: Remove defaults. Batch 6 #5843

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1 change: 0 additions & 1 deletion modules/nf-core/ultra/pipeline/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: ultra_pipeline
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::ultra_bioinformatics=0.1
1 change: 0 additions & 1 deletion modules/nf-core/ultraplex/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: ultraplex
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::ultraplex=1.2.5
1 change: 0 additions & 1 deletion modules/nf-core/umicollapse/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: umicollapse
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::umicollapse=1.0.0
1 change: 0 additions & 1 deletion modules/nf-core/umitools/dedup/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: umitools_dedup
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::umi_tools=1.1.5
1 change: 0 additions & 1 deletion modules/nf-core/umitools/extract/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: umitools_extract
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::umi_tools=1.1.5
1 change: 0 additions & 1 deletion modules/nf-core/umitools/group/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: umitools_group
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::umi_tools=1.1.5
1 change: 0 additions & 1 deletion modules/nf-core/umitools/prepareforrsem/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: umitools_prepareforrsem
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::umi_tools=1.1.5
1 change: 0 additions & 1 deletion modules/nf-core/unicycler/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: unicycler
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::unicycler=0.5.0
1 change: 0 additions & 1 deletion modules/nf-core/universc/environment.yml
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Expand Up @@ -2,4 +2,3 @@ name: universc
channels:
- conda-forge
- bioconda
- defaults
1 change: 0 additions & 1 deletion modules/nf-core/untar/environment.yml
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Expand Up @@ -3,7 +3,6 @@ name: untar
channels:
- conda-forge
- bioconda
- defaults

dependencies:
- conda-forge::grep=3.11
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1 change: 0 additions & 1 deletion modules/nf-core/untarfiles/environment.yml
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Expand Up @@ -2,7 +2,6 @@ name: untarfiles
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- conda-forge::sed=4.7
- bioconda::grep=3.4
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1 change: 0 additions & 1 deletion modules/nf-core/unzip/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: unzip
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- conda-forge::p7zip=16.02
1 change: 0 additions & 1 deletion modules/nf-core/unzipfiles/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: unzipfiles
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- conda-forge::p7zip=16.02
1 change: 0 additions & 1 deletion modules/nf-core/upd/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: upd
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::upd=0.1.1
1 change: 0 additions & 1 deletion modules/nf-core/vardictjava/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vardictjava
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vardict-java=1.8.3
1 change: 0 additions & 1 deletion modules/nf-core/variantbam/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: variantbam
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::variantbam=1.4.4a
1 change: 0 additions & 1 deletion modules/nf-core/varlociraptor/callvariants/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: varlociraptor_callvariants
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::varlociraptor=8.1.1
1 change: 0 additions & 1 deletion modules/nf-core/varlociraptor/estimatealignmentproperties/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: varlociraptor_estimatealignmentproperties
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::varlociraptor=8.1.1
1 change: 0 additions & 1 deletion modules/nf-core/varlociraptor/preprocess/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: varlociraptor_preprocess
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::varlociraptor=8.1.1
1 change: 0 additions & 1 deletion modules/nf-core/vcf2cytosure/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vcf2cytosure
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vcf2cytosure=0.9.1
1 change: 0 additions & 1 deletion modules/nf-core/vcf2db/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vcf2db
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vcf2db=2020.02.24
1 change: 0 additions & 1 deletion modules/nf-core/vcf2maf/environment.yml
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Expand Up @@ -2,7 +2,6 @@ name: vcf2maf
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vcf2maf=1.6.21
- bioconda::ensembl-vep=106.1
1 change: 0 additions & 1 deletion modules/nf-core/vcfanno/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vcfanno
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vcfanno=0.3.5
1 change: 0 additions & 1 deletion modules/nf-core/vcflib/vcfbreakmulti/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vcflib_vcfbreakmulti
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vcflib=1.0.3
1 change: 0 additions & 1 deletion modules/nf-core/vcflib/vcffilter/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vcflib_vcffilter
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vcflib=1.0.3
1 change: 0 additions & 1 deletion modules/nf-core/vcflib/vcffixup/environment.yml
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Expand Up @@ -4,6 +4,5 @@ name: "vcflib_vcffixup"
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- "bioconda::vcflib=1.0.3"
1 change: 0 additions & 1 deletion modules/nf-core/vcflib/vcfuniq/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vcflib_vcfuniq
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vcflib=1.0.3
1 change: 0 additions & 1 deletion modules/nf-core/vcftools/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vcftools
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vcftools=0.1.16
1 change: 0 additions & 1 deletion modules/nf-core/velocyto/environment.yml
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Expand Up @@ -4,6 +4,5 @@ name: "velocyto"
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- "bioconda::velocyto.py=0.17.17"
1 change: 0 additions & 1 deletion modules/nf-core/verifybamid/verifybamid/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: VERIFYBAMID_VERIFYBAMID
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::verifybamid=1.1.3
1 change: 0 additions & 1 deletion modules/nf-core/verifybamid/verifybamid2/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: VERIFYBAMID_VERIFYBAMID2
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::verifybamid2=2.0.1
1 change: 0 additions & 1 deletion modules/nf-core/vg/construct/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vg_construct
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vg=1.45.0
1 change: 0 additions & 1 deletion modules/nf-core/vg/deconstruct/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vg_deconstruct
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vg=1.43.0
1 change: 0 additions & 1 deletion modules/nf-core/vg/index/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vg_index
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vg=1.45.0
1 change: 0 additions & 1 deletion modules/nf-core/viennarna/rnacofold/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: "viennarna_rnacofold"
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- "bioconda::viennarna=2.6.4"
1 change: 0 additions & 1 deletion modules/nf-core/viennarna/rnafold/environment.yml
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Expand Up @@ -4,6 +4,5 @@ name: "viennarna_rnafold"
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- "bioconda::viennarna=2.6.4"
1 change: 0 additions & 1 deletion modules/nf-core/viennarna/rnalfold/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: "viennarna_rnalfold"
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- "bioconda::viennarna=2.6.4"
1 change: 0 additions & 1 deletion modules/nf-core/vireo/environment.yml
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Expand Up @@ -4,6 +4,5 @@ name: "vireo"
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- "bioconda::vireosnp=0.5.8"
1 change: 0 additions & 1 deletion modules/nf-core/vrhyme/extractunbinned/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vrhyme_extractunbinned
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vrhyme=1.1.0
1 change: 0 additions & 1 deletion modules/nf-core/vrhyme/linkbins/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vrhyme_linkbins
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vrhyme=1.1.0
1 change: 0 additions & 1 deletion modules/nf-core/vrhyme/vrhyme/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vrhyme_vrhyme
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vrhyme=1.1.0
1 change: 0 additions & 1 deletion modules/nf-core/vsearch/cluster/environment.yml
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Expand Up @@ -2,7 +2,6 @@ name: vsearch_cluster
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vsearch=2.21.1
- bioconda::samtools=1.16.1
1 change: 0 additions & 1 deletion modules/nf-core/vsearch/sintax/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vsearch_sintax
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vsearch=2.21.1
1 change: 0 additions & 1 deletion modules/nf-core/vsearch/sort/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vsearch_sort
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vsearch=2.21.1
1 change: 0 additions & 1 deletion modules/nf-core/vsearch/usearchglobal/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vsearch_usearchglobal
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vsearch=2.21.1
1 change: 0 additions & 1 deletion modules/nf-core/vt/decompose/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vt_decompose
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vt=2015.11.10
1 change: 0 additions & 1 deletion modules/nf-core/vt/normalize/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: vt_normalize
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::vt=2015.11.10
1 change: 0 additions & 1 deletion modules/nf-core/wfmash/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: wfmash
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::wfmash=0.13.0
1 change: 0 additions & 1 deletion modules/nf-core/wgsim/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: wgsim
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::wgsim=1.0
1 change: 0 additions & 1 deletion modules/nf-core/whamg/environment.yml
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Expand Up @@ -2,7 +2,6 @@ name: whamg
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::wham=1.8.0
- bioconda::tabix=1.11
1 change: 0 additions & 1 deletion modules/nf-core/windowmasker/convert/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: windowmasker_convert
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::blast=2.15.0
1 change: 0 additions & 1 deletion modules/nf-core/windowmasker/mkcounts/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: windowmasker_mkcounts
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::blast=2.15.0
1 change: 0 additions & 1 deletion modules/nf-core/windowmasker/ustat/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: windowmasker_ustat
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::blast=2.15.0
1 change: 0 additions & 1 deletion modules/nf-core/wisecondorx/convert/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: wisecondorx_convert
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::wisecondorx=1.2.5
1 change: 0 additions & 1 deletion modules/nf-core/wisecondorx/gender/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: wisecondorx_gender
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::wisecondorx=1.2.5
1 change: 0 additions & 1 deletion modules/nf-core/wisecondorx/newref/environment.yml
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Expand Up @@ -2,6 +2,5 @@ name: wisecondorx_newref
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::wisecondorx=1.2.5
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