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Add dshbio/fastatoparquet module #5994

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@heuermh heuermh commented Jul 18, 2024

Creating draft modules for benchmarking purposes during BOSC CoFest. Please do not merge!

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@famosab
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famosab commented Mar 11, 2025

@heuermh Do you still need this PR open or can it be closed? :)

@luisas luisas added awaiting-changes will be closed after 30 days awaiting-feedback will be closed after 30 days labels Mar 11, 2025
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heuermh commented Mar 11, 2025

@famosab Thanks for asking! Yes, this is still in progress. I will bring it up to date during the upcoming nf-core hackathon.

@luisas luisas moved this from Bumped to In progress in 2025 spring cleaning - modules (PRs) Mar 11, 2025
@famosab famosab removed awaiting-changes will be closed after 30 days awaiting-feedback will be closed after 30 days labels Mar 11, 2025
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