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Added nf-test for mitohifi/findmitoreference #6484

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Added nf-test for mitohifi/findmitoreference #6484

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GallVp
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@GallVp GallVp commented Aug 30, 2024

Added nf-test for mitohifi/findmitoreference with #6226

@GallVp GallVp requested review from verku and a team as code owners August 30, 2024 01:49
@GallVp GallVp requested review from kpadm and removed request for a team August 30, 2024 01:49
@GallVp GallVp marked this pull request as draft August 30, 2024 01:54
@GallVp GallVp marked this pull request as ready for review August 30, 2024 03:34
@GallVp GallVp added help wanted Extra attention is needed and removed delete-pytest labels Aug 30, 2024
@chriswyatt1
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I found that the container download on my macM3 but not on gitpod:

docker run -it ghcr.io/marcelauliano/mitohifi:master bash
Works on mac, but fails with this error on gitpod:

Unable to find image 'ghcr.io/marcelauliano/mitohifi:master' locally
master: Pulling from marcelauliano/mitohifi
cd150c608fee: Pull complete 
2dba27d875ea: Pull complete 
4f4fb700ef54: Pull complete 
b391f6a39500: Extracting [==================================================>]  2.334MB/2.334MB
4d576e048711: Download complete 
8744423396a5: Download complete 
6d13eabd89e6: Download complete 
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docker: failed to register layer: failed to Lchown "/opt/minimap2-2.24_x64-linux" for UID 54818, GID 1048853 (try increasing the number of subordinate IDs in /etc/subuid and /etc/subgid): lchown /opt/minimap2-2.24_x64-linux: invalid argument.
See 'docker run --help'.

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Is it because the container is 8+GB that it fails on the CI?

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@verku verku Awaiting requested review from verku

@kpadm kpadm Awaiting requested review from kpadm kpadm was automatically assigned from nf-core/nf-test

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@GallVp @chriswyatt1 @SPPearce