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Don't skip whole trimming workflows #6785

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merged 1 commit into from
Oct 15, 2024
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pinin4fjords
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I was too hasty on #6781 we shouldn't be skipping the whole subworkflows there.

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@pinin4fjords pinin4fjords added this pull request to the merge queue Oct 15, 2024
Merged via the queue into master with commit 9082d64 Oct 15, 2024
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@pinin4fjords pinin4fjords deleted the pinin4fjords-patch-1 branch October 15, 2024 18:56
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2 participants