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Add index format to samtools view#7481

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fellen31 wants to merge 14 commits intonf-core:masternf-core/modules:masterfrom fellen31:samtools-view-index-typefellen31/modules:samtools-view-index-typeCopy head branch name to clipboard

+1,077-246

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Commits on Feb 14, 2025

• Add output index type to samtools view

  fellen31

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  bb3ec89

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• fix modules/subworkflows with samtools view

  fellen31

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  ca0e2d9

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• fix meta.yml

  fellen31

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  aa151d8

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• fix endorspy

  fellen31

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  09ce076

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• fix leehom

  fellen31

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  e7a0e94

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• fix graphtyper

  fellen31

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  2c988a4

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• Merge branch 'master' into samtools-view-index-type

  fellen31

  authored
  528004e

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• fix metaphlan3

  fellen31

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  0e3a3ec

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• fix

  fellen31

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  68b686d

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• port bam split by region to nf-test

  fellen31

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  c148d20

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• fix

  fellen31

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  161a736

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• try to fix CI

  fellen31

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Commits on Feb 19, 2025

• Don't check tests folder at all

  fellen31

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  0b87a48

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Commits on Feb 20, 2025

• Merge branch 'master' into samtools-view-index-type

  fellen31

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  ab4c112

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