Important! Template update for nf-core/tools v3.0.1 #3380
GitHub Actions / JUnit Test Report
failed
Oct 9, 2024 in 0s
2 tests run, 0 passed, 0 skipped, 2 failed.
Annotations
Check failure on line 1 in Test pipeline with Salmon, skipping both QC and alignment
github-actions / JUnit Test Report
Test pipeline with Salmon, skipping both QC and alignment.Params: --pseudo_aligner salmon --skip_qc --skip_alignment
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/tests/../main.nf` [dreamy_tuckerman] DSL2 - revision: b67fa8fbe5
Downloading plugin [email protected]
ERROR ~ Extension 'fromList' it isn't defined by plugin nf-schema
-- Check script '/home/runner/work/rnaseq/rnaseq/./workflows/rnaseq/main.nf' at line: 53 or see '/home/runner/work/rnaseq/rnaseq/~/tests/2c97d6a7ef1fd209d075664ba337cec3/meta/nextflow.log' file for more details
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test pipeline with Salmon, skipping both QC and alignment
github-actions / JUnit Test Report
Test pipeline with Salmon, skipping both QC and alignment.Params: --pseudo_aligner salmon --skip_qc --skip_alignment - stub
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/tests/../main.nf` [amazing_euclid] DSL2 - revision: b67fa8fbe5
ERROR ~ Extension 'fromList' it isn't defined by plugin nf-schema
-- Check script '/home/runner/work/rnaseq/rnaseq/./workflows/rnaseq/main.nf' at line: 53 or see '/home/runner/work/rnaseq/rnaseq/~/tests/908031450a7ded0286feeb8349fa90b1/meta/nextflow.log' file for more details
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
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