v0.2.0dev #8
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v0.2.0dev #8
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jfy133
approved these changes
Apr 26, 2023
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Convert to YML nhttps://github.com/nf-core/modules/blob/master/.github/ISSUE_TEMPLATE/new_module.yml
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| ## Required information for the package | ||
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| - DOI of publication: https://doi.org/10.1038/s41467-018-07483-5 |
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Use yml for suggestions, or state that these are exampels to be replaced
| labels: "package update" | ||
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TCLamnidis
commented
Apr 26, 2023
TCLamnidis
commented
Apr 26, 2023
Co-authored-by: James A. Fellows Yates <[email protected]>
nevrome
approved these changes
Apr 27, 2023
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Added versioning to scripts and helper functions.
Added FastQ file name to initial TSVs to help with PR review.
Closes #7
CHANGELOG:
v0.2.0dev - 25/04/2023
Addedscripts/source_me.sh: Includes various helper functions for all other scripts.scripts/create_eager_input.sh: Script to create a preliminary nf-core/eager input TSV from a SSF file.scripts/download_ena_data.py: Python script to read SSF file, download FastQs from the ENA, and create a file of expected md5sums.scripts/run_download.sh: Wrapper script to submit the FastQ download job to the local MPI-EVA cluster.scripts/validate_downloaded_data.sh: Script to validate the downloaded data, and create the intended symlinks for running nf-core/eager.CHANGELOG.mdscripts/run_eager.sh: Script to run nf-core/eager for all packages that need (re-)running.scripts/submit_as_array.sh: Helper script for submitting eager jobs as an SGE array on the MPI_EVA cluster.config_profile_description.FixedDependenciesDeprecated