Code

v0.2.0dev#8

Code

Merged

TCLamnidis merged 51 commits intomainposeidon-framework/poseidon-eager:mainfrom devposeidon-framework/poseidon-eager:devCopy head branch name to clipboardMay 5, 2023

+683-116

Commits

Commits on Apr 17, 2023

• Update r1_r2_from_ena_fastq. Add version string

  TCLamnidis

  committed
  fbd3a4e

• Version tracking

  TCLamnidis

  committed
  ff4241e

• Added columns with symlink target fn. version tracking.

  TCLamnidis

  committed
  a3124aa

• keep only needed columns. version tracking

  TCLamnidis

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  d6be8cc

• version bugfix

  TCLamnidis

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  0608253

• add pipefail and variable check

  TCLamnidis

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  31af81f

Commits on Apr 18, 2023

• Add Changelog

  TCLamnidis

  committed
  3365b80

• Update github actions.

  TCLamnidis

  committed
  e2301cf

• Make tsv_patch executable

  TCLamnidis

  committed
  f67e55e

• Use absolute paths in expected_md5sums.txt

  TCLamnidis

  committed
  6a1b58c

• deactivate unbound variable errors

  TCLamnidis

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  36ee623

• ignore raw_sequencing_data

  TCLamnidis

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  1d0323d

• Add version info

  TCLamnidis

  committed
  bee2d5a

• remove old option string

  TCLamnidis

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  81b2f34

• remove debug printing

  TCLamnidis

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  df7552e

• update local data dir

  TCLamnidis

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  a14771c

• Add script to do all local steps in one

  TCLamnidis

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  721d6d0

Commits on Apr 20, 2023

• update config files. Add versioning

  TCLamnidis

  committed
  7687f09

• fix config suffix

  TCLamnidis

  committed
  b21affe

• add eager dirs to gitignore

  TCLamnidis

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  9ab7958

• add generic array submission from txt file script

  TCLamnidis

  committed
  23f1829

• initial run_eager.sh commit

  TCLamnidis

  committed
  d6c7530

Commits on Apr 24, 2023

• tower bugfix

  TCLamnidis

  committed
  579d756

• add ss suffix for ss libs in symlinks

  TCLamnidis

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  2690130

• Add package config version.

  TCLamnidis

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  5932b22

• add githubb url to poseidon config

  TCLamnidis

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  0001527

• bugfix. no duplicate version lines

  TCLamnidis

  committed
  8f87554

• run eager when package cofig is updated.

  TCLamnidis

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  d2ffddf

• Updated CHANGELOG.md

  TCLamnidis

  committed
  1a757d1

• Issue request templates

  TCLamnidis

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  ab3c46e

• Update GH issue config and CHANGELOG

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  committed
  4f36962

Commits on Apr 25, 2023

• correct changelog version number

  TCLamnidis

  committed
  08d46cd

• Add date to CHANGELOG

  TCLamnidis

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  b9b84bf

• Homogenise script versions

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  da5be88

• move issue template dir

  TCLamnidis

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  a23e123

• explanatory comments

  TCLamnidis

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  859077c

• Add PR template. update issue templates and delphis-bot

  TCLamnidis

  committed
  d5cd4de

• Update CHANGELOG.md

  TCLamnidis

  committed
  6ff4752

• Update Changelog

  TCLamnidis

  committed
  332590a

• typo

  TCLamnidis

  committed
  9f832e9

Commits on Apr 26, 2023

• Apply suggestions from code review

  Show description for 0052588
  

  TCLamnidis

  and

  jfy133

  authored
  0052588

• Merge branch 'dev' of github.com:poseidon-framework/poseidon-eager into dev

  TCLamnidis

  committed
  cee00d8

Commits on May 4, 2023

• change to active checklist

  TCLamnidis

  committed
  7b79193

• check issues too. clearer that given doi and accession are examples.

  TCLamnidis

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  7934734

• clearer example. active rephrasing

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  85f75dc

• Harshil align

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  53e4a91

• add reminder TODO for aspera

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  61a2fbd

• Add note about local paths

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  f26657b

• move local_path profile to EVA config

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  4ac4b2f

• rename Poseidon to Minotaur

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  committed
  ca4be8b

• Added comment explaining the file's purpose

  TCLamnidis

  committed
  a83237c