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Pull requests list

add more xenium 4.0 test datasets
#330 opened Oct 7, 2025 by pryvkin10x Loading…
1
Feat: Support for Visium HD cell segmentation in Space Ranger 4.0
#328 opened Oct 6, 2025 by stephenwilliams22 • Draft
5 of 6 tasks
6
Align CLI arguments with reader APIs for full parameter consistency
#321 opened Sep 5, 2025 by Copilot AI • Draft
@LucaMarconato @Copilot
Update legacy_anndata.py
#320 opened Sep 4, 2025 by Liripo Loading…
1
[pre-commit.ci] pre-commit autoupdate
#316 opened Aug 18, 2025 by pre-commit-ci bot Loading…
add support for xenium software 4.0 xenium
#312 opened Aug 1, 2025 by pryvkin10x Loading…
12
Fixes #298: Repeatedly appending parent path to flatFiles
#305 opened Apr 29, 2025 by mayank-singh-sikarwar Loading…
1
Use scanpy for reading matrixes
#292 opened Mar 19, 2025 by cgeyskens Loading…
Cosmx reader with stitching
#290 opened Mar 18, 2025 by quentinblampey Loading…
Xenium Reader now filters out invalid polygons xenium
#283 opened Feb 27, 2025 by timtreis Loading…
1
New reader for G4X datasets (Singular Genomics)
#281 opened Feb 19, 2025 by ckmah Loading…
3
Chunkwise image loader
#279 opened Feb 17, 2025 by lucas-diedrich Loading…
9
Fixes seqfish reader v2 seqfish
#268 opened Jan 28, 2025 by LucaMarconato Loading…
Add universal image loader
#234 opened Nov 5, 2024 by minhtien-trinh • Draft
2
Add reader for DIA-NN output
#233 opened Nov 5, 2024 by minhtien-trinh Loading…
1
Reduce reader memory consumption
#228 opened Oct 28, 2024 by marcovarrone • Draft
2
extract shape of full-resolution image, estimate visium pixel size
#219 opened Oct 10, 2024 by ghaith-mq • Draft
1
adjusted docstrings in steinbock reader py file
#165 opened Jun 27, 2024 by LukasHats Loading…
1
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