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Handle initial guess (ColabFold)#8

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Commits on Mar 18, 2024

• Refactor model.py: Add initial guess for all_atom_positions

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• Add saving Protein to mmCIF file and reading Protein from mmCIF (from AF2 repo - 6c4d833)

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Commits on Mar 19, 2024

• Update AlphaFold version in metadata

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• Merge pull request #1 from Poko18/mmcifparsing

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