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28 Open 94 Closed
28 Open 94 Closed
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Issues list

How to subset cell types within a spatial annotation
#177 opened Sep 29, 2024 by SavKilPat
@kueckelj
2
how to get histology in SPATA2
#176 opened Sep 29, 2024 by wuxiangning
15
Error in asSPATA2()
#173 opened Sep 26, 2024 by khpark00
3
Error code
#171 opened Sep 22, 2024 by Cong1975
1
Error using asSPATA2: 'Invalid spatial measure input at position 1'
#170 opened Sep 9, 2024 by RookieA1
7
issue with Visium V2: converting from adata to SPATA2
#168 opened Sep 4, 2024 by GUOYF0412
@simonmfr
2
spatialTrajectoryScreening Error - discrepancy between names and columns bug Something isn't working
#160 opened Aug 28, 2024 by SavKilPat
@kueckelj
14
An error was reported when I installed it
#156 opened Aug 26, 2024 by dfgao
11
how to add similar function dendrogram=True for determine ref and malignant in plotCnvHeatmap enhancement New feature or request
#147 opened Aug 15, 2024 by huiyijiangling New CNV and subclonality features
@kueckelj
1
error in runAutoencoderDenoising
#145 opened Aug 7, 2024 by renyzh5
3
work with multiple slices in SPATA2
#134 opened Jul 18, 2024 by sanrishiguang
1
Visium Method considered as VisiumV2
#130 opened Jul 10, 2024 by nixnmtm
3
Could not find count matrix in specified seurat object
#129 opened Jul 4, 2024 by yanglq-bioinfo
3
Issues with converting SPATA objects to seurat objects bug Something isn't working
#128 opened Jul 2, 2024 by mattli7
@simonmfr
1
plotTrajectoryLineplot empy plot
#127 opened Jun 24, 2024 by MatteoRiva95
1
issue with VisiumV2 class object
#125 opened May 29, 2024 by thdk13
8
Can it works on Slide-seq data?
#116 opened May 7, 2024 by ShaowenJ
1
QC filter SPATA2 object / SPATA2 to Seurat
#113 opened May 2, 2024 by BaluPai
2
Spatially weighted regression analysis enhancement New feature or request
#111 opened Apr 19, 2024 by yeswzc
1
Error in runAutoencoderDenoising
#109 opened Apr 5, 2024 by p-lombard
2
Error in (function (cl, name, valueClass) : 'id' is not a slot in the 'Image' class in example dataset
#104 opened Mar 2, 2024 by 1667857557
1
[SPATA2] tutorial for annotation upload and subsequent infercnv run
#93 opened Oct 27, 2023 by jpark27
1
PlotSurface smoothing works for individual genes, but not gene sets
#89 opened Sep 25, 2023 by wlwang20
5
Lost some info after converting to spata2 object
#87 opened Aug 28, 2023 by phoebee-h
@kueckelj
6
Error in createTrajectoryManually : in stringr::str_c():! ..2 must be a vector, not a symbol.
#60 opened Feb 24, 2023 by Kuze99
6
ProTip! Exclude everything labeled bug with -label:bug.