Flexible analysis of high-content CRISPR screening
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Updated
Jul 14, 2024 - Python
Flexible analysis of high-content CRISPR screening
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
some scripts used in bioinformatics research
Personal blog on computational biology and pathology
TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy
群体遗传学分析中用到的script和skill等
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Variant Calling and Annotation using PacBio Hi-Fi Reads
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
Genomic interval operations on Pandas DataFrames
A repository for efficient population genomic analysis using Snakemake workflow.
Genetic Medicine of African Populations
💻 Analysis codes and bioinformatic pipelines for paper "HIV-1-induced host genomic R-loops dictate HIV-1 integration site selection"
LOVD+ -- LOVD for diagnostics: analysis of whole-exome data using LOVD.
Circrnas in Host And viRuses anaLysis pIpEline for Detection Annotation Quantification of circRNAs
Workshop • Intro to Bioinformatics using NGS data • 5 days
This repo contains the pipeline and methodology as well as results of the Chip-seq analysis project
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