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Stop applying a score scale *and* a score window to HiFi reads
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@adamnovak
adamnovak committed Jun 27, 2024
1 parent ef2a138 commit 1b52afe
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1 change: 0 additions & 1 deletion src/subcommand/giraffe_main.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -892,7 +892,6 @@ int main_giraffe(int argc, char** argv) {
// Don't do gapless extension
.add_entry<size_t>("gapless-extension-limit", 0)
.add_entry<double>("mapq-score-scale", 0.001)
.add_entry<size_t>("mapq-score-window", 150)
.add_entry<double>("zipcode-tree-score-threshold", 100.0)
.add_entry<double>("pad-zipcode-tree-score-threshold", 50.0)
.add_entry<double>("zipcode-tree-coverage-threshold", 0.5)
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vg CI tests complete for branch lr-giraffe. View the full report here.

16 tests passed, 0 tests failed and 0 tests skipped in 17633 seconds

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