Change default min unique node fraction to 0 to turn it off

vgteam · May 22, 2024 · d3326dd · d3326dd · adamnovak · May 23, 2024
1 parent 220e416
commit d3326dd
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/minimizer_mapper.hpp b/src/minimizer_mapper.hpp
@@ -387,8 +387,8 @@ class MinimizerMapper : public AlignerClient {
     int wfa_max_distance = default_wfa_max_distance;
 
     /// How much of an alignment needs to be from distinct nodes to be a distinct alignment?
-    static constexpr double default_min_unique_node_fraction = 0.5;
-    double min_unique_node_fraction = 0.5;
+    static constexpr double default_min_unique_node_fraction = 0.0;
+    double min_unique_node_fraction = default_min_unique_node_fraction;
 
     /// If set, cap mapping quality based on minimizer layout in the read. Only
     /// really likely to help for short reads.