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Better error messages from vg haplotypes #4121

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merged 1 commit into from
Oct 19, 2023
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jltsiren
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Changelog Entry

To be copied to the draft changelog by merger:

  • Better error messages from vg haplotypes.

Description

Better error messages from vg haplotypes, particularly when the KFF file or the haplotype information file cannot be opened. Also try to catch more exceptions and report the errors without the garbage surrounding uncaught exceptions.

@adamnovak
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It looks like CI failed when testing the current version of the tube map against vg. I think the problem is an intermittent test failure in the tube map, caused possibly by cross-talk between different tests, or by not using the testing library right.

I've slightly improved the tube map tests, and I haven't been able to trigger it locally. I've rerun the job here; hopefully it passes now.

@jltsiren jltsiren merged commit 6e41d53 into master Oct 19, 2023
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@jltsiren jltsiren deleted the vg-haplotypes-errors branch October 19, 2023 02:21
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