Turn surject's hard filter for long tails into a soft filter #4350
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Merging for now as a better alternative to what is currently in master, but still plan to do some more analysis to decide if this is the best approach. |
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Changelog Entry
To be copied to the draft changelog by merger:
vg surjectis faster on long readsDescription
Long tails will now be aligned up to some maximum length and then softclipped beyond that. The default value is 300 bp.