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Allow reads to softclip at the end of a path in vg inject #4385

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merged 3 commits into from
Sep 10, 2024

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@adamnovak adamnovak commented Aug 31, 2024

Changelog Entry

To be copied to the draft changelog by merger:

  • vg inject can now handle reads that softclip after the end of the target path

Description

This fixes #4379 by allowing softclip edits that happen after the whole target path has been consumed. I'm cherry-picking some commits out of the lr-giraffe branch.

@adamnovak adamnovak merged commit 95bcbb4 into master Sep 10, 2024
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The Amazing Uninjectable SAM
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