Code

Release PR for 2.1.0#222

Code

Merged

nerdstrike merged 48 commits intomasterwtsi-npg/npg_langqc:masterfrom develwtsi-npg/npg_langqc:develCopy head branch name to clipboardApr 15, 2024

+3,404-1,051

Commits

Commits on Feb 23, 2024

• Added a scripts to validate ID generator

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Commits on Feb 26, 2024

• Merge pull request #201 from mgcam/validate_id_generation

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• Update PacBioProductMetrics definition to include new per-product metrics

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Commits on Feb 28, 2024

• Removed unused method

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• Merge pull request #203 from mgcam/drop_unused_method

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• Incorrect type for hifi_read_length_mean

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Commits on Feb 29, 2024

• Merge pull request #202 from nerdstrike/extend_orm_product_metrics

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Commits on Mar 4, 2024

• Ensure empty lists of qc states are not returned.

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• A single call to retrieve qc states for products.

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• Optimised qc state retrieval for a single product.

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• Uniform compute for wells that have not been qc-ed.

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• Moved the code next to its doc

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• Simplified getting qc states for multiple products.

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Commits on Mar 5, 2024

• Use Optional type hint for fields with None default

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• Merge pull request #209 from mgcam/optimise_qc_state_retrieval

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• pydantic BaseModel is replaced by pydantic dataclass

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• Make the dataclasses semi-immutable - no change for the values

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Commits on Mar 6, 2024

• Auto-map column names to model fields

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Commits on Mar 7, 2024

• Update documentation

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• Merge pull request #210 from mgcam/towards_pydantic_dataclass

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Commits on Mar 15, 2024

• Incorrect column name in mlwh

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• Merge pull request #215 from nerdstrike/devel

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Commits on Mar 18, 2024

• Update documentation

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• Added pb well summary model

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• Added new test fixtures and tests.

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• Updated CHANGELOG.md

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• Moved a utility function into the table class.

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• Merged two sets of mlwh db JSON fixtures

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• Used pytest fixtute to load run data from YAML.

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• Dropped explicit db tables clean-up.

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Commits on Mar 22, 2024

• Merge pull request #212 from mgcam/study_name4summary

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• Added study names tooltip on hover and highlighted the BIOSCAN study.

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• Introduced 'On hold external' QC state.

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• Described recent changes.

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Commits on Mar 25, 2024

• Merge pull request #213 from mgcam/display_study_names

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• Merge pull request #216 from mgcam/on_hold_external

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• Merge pull request #217 from mgcam/changelog_update

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Commits on Mar 26, 2024

• Silence warnings from JS toolchain

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• Merge branch 'update_toolchain' of https://github.com/nerdstrike/npg_langqc into update_toolchain

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Commits on Apr 3, 2024

• Update github test pipeline to use newer node versions in tests and actions

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• Update action versions in other github pipelines

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• Merge pull request #218 from nerdstrike/update_toolchain

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Commits on Apr 5, 2024

• Switched to light theme for the well button

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• Merge pull request #219 from mgcam/light_well_button

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Commits on Apr 9, 2024

• Fixed an error in the db migration script

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• Merge pull request #220 from mgcam/migration_sql_fix

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Commits on Apr 12, 2024

• Updated app version to 2.1.0

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Commits on Apr 15, 2024

• Merge pull request #221 from mgcam/prep_release_2.1

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