Add GMM-Demux #12751
mari-gatest.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
Annotations
32 errors and 2 warnings
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nf-core-lint-modules (checkqc)
Process completed with exit code 1.
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nf-core-lint-modules (gmmdemux)
Process completed with exit code 1.
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nf-test (modules/nf-core/kalign/align, docker_self_hosted)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
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nf-test (modules/nf-core/kalign/align, docker_self_hosted)
The operation was canceled.
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nf-test (modules/nf-core/eggnogmapper, conda)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
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nf-test (modules/nf-core/eggnogmapper, conda)
The operation was canceled.
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nf-test (modules/nf-core/last/mafswap, conda)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
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nf-test (modules/nf-core/last/mafswap, conda)
The operation was canceled.
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nf-test (modules/nf-core/tcoffee/irmsd, docker_self_hosted)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
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nf-test (modules/nf-core/tcoffee/irmsd, docker_self_hosted)
The operation was canceled.
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nf-test (modules/nf-core/antismash/antismashlite, singularity)
Canceling since a higher priority waiting request for 'Run tests-5892' exists
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nf-test (modules/nf-core/antismash/antismashlite, singularity)
The operation was canceled.
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nf-test (modules/nf-core/narfmap/align, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5892' exists
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nf-test (modules/nf-core/narfmap/align, docker_self_hosted)
The operation was canceled.
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nf-test (modules/nf-core/tcoffee/irmsd, conda)
Canceling since a higher priority waiting request for 'Run tests-5892' exists
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nf-test (modules/nf-core/tcoffee/irmsd, conda)
The operation was canceled.
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nf-test (modules/nf-core/antismash/antismashlite, conda)
Canceling since a higher priority waiting request for 'Run tests-5892' exists
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nf-test (modules/nf-core/antismash/antismashlite, conda)
The operation was canceled.
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nf-test (subworkflows/nf-core/bam_qc_picard, conda)
Canceling since a higher priority waiting request for 'Run tests-5892' exists
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nf-test (subworkflows/nf-core/bam_qc_picard, conda)
Process completed with exit code 1.
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nf-test (subworkflows/nf-core/bam_qc_picard, conda)
The operation was canceled.
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nf-test (modules/nf-core/tcoffee/tcs, conda)
Canceling since a higher priority waiting request for 'Run tests-5892' exists
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nf-test (modules/nf-core/tcoffee/tcs, conda)
The operation was canceled.
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nf-test (modules/nf-core/narfmap/align, conda)
Canceling since a higher priority waiting request for 'Run tests-5892' exists
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nf-test (modules/nf-core/narfmap/align, conda)
The operation was canceled.
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nf-test (modules/nf-core/last/mafswap, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5892' exists
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nf-test (modules/nf-core/last/mafswap, docker_self_hosted)
The self-hosted runner: ubuntu-2204-x64_i-0b55b8e359052213b lost communication with the server. Verify the machine is running and has a healthy network connection. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.
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nf-test (modules/nf-core/last/lastal, conda)
Canceling since a higher priority waiting request for 'Run tests-5892' exists
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nf-test (modules/nf-core/last/lastal, conda)
The self-hosted runner: ubuntu-2204-x64_i-05ecc96a6764cc33a lost communication with the server. Verify the machine is running and has a healthy network connection. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.
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nf-test (modules/nf-core/plink/ld, conda)
Canceling since a higher priority waiting request for 'Run tests-5892' exists
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nf-test (modules/nf-core/plink/ld, conda)
The self-hosted runner: ubuntu-2204-x64_i-022ac958bcb8afe16 lost communication with the server. Verify the machine is running and has a healthy network connection. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.
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confirm-pass
Process completed with exit code 1.
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pytest-changes
The following actions uses Node.js version which is deprecated and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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