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Add GMM-Demux

Add GMM-Demux #12751

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Job Run time
pre-commit
14s
prettier
1m 7s
editorconfig
16s
nf-test-changes
1m 40s
pytest-changes
7s
pytest
0s
nf-core-lint-modules (bam_qc_picard)
41s
nf-core-lint-modules (fastq_align_mapad)
58s
nf-core-lint-modules (bcl_demultiplex)
49s
nf-core-lint-modules (vardictjava)
2m 4s
nf-core-lint-modules (windowmasker/mkcounts)
1m 24s
nf-core-lint-modules (picard/crosscheckfingerprints)
2m 3s
nf-core-lint-modules (kalign/align)
2m 3s
nf-core-lint-modules (windowmasker/convert)
1m 19s
nf-core-lint-modules (last/postmask)
2m 0s
nf-core-lint-modules (happy/prepy)
2m 1s
nf-core-lint-modules (plink/ld)
2m 4s
nf-core-lint-modules (happy/ftxpy)
2m 7s
nf-core-lint-modules (prokka)
1m 13s
nf-core-lint-modules (survivor/bedpetovcf)
1m 14s
nf-core-lint-modules (mash/screen)
2m 10s
nf-core-lint-modules (eggnogmapper)
2m 22s
nf-core-lint-modules (last/mafswap)
2m 11s
nf-core-lint-modules (checkqc)
1m 55s
nf-core-lint-modules (bedops/convert2bed)
1m 8s
nf-core-lint-modules (antismash/antismashlite)
1m 10s
nf-core-lint-modules (mapad/map)
2m 17s
nf-core-lint-modules (tiddit/cov)
1m 32s
nf-core-lint-modules (bclconvert)
1m 5s
nf-core-lint-modules (smoothxg)
1m 8s
nf-core-lint-modules (nanofilt)
1m 10s
nf-core-lint-modules (survivor/stats)
1m 13s
nf-core-lint-modules (gmmdemux)
2m 0s
nf-core-lint-modules (tabix/tabix)
1m 16s
nf-core-lint-modules (pyrodigal)
1m 11s
nf-core-lint-modules (pigz/uncompress)
2m 7s
nf-core-lint-modules (windowmasker/ustat)
1m 13s
nf-core-lint-modules (paraphase)
2m 4s
nf-core-lint-modules (biscuit/align)
2m 6s
nf-core-lint-modules (porechop/abi)
1m 10s
nf-core-lint-modules (lima)
2m 6s
nf-core-lint-modules (presto/filterseq)
1m 13s
nf-core-lint-modules (tabix/bgzip)
1m 16s
nf-core-lint-modules (diamond/makedb)
2m 6s
nf-core-lint-modules (metamaps/mapdirectly)
2m 1s
nf-core-lint-modules (bedops/gtf2bed)
1m 38s
nf-core-lint-modules (chewbbaca/createschema)
1m 58s
nf-core-lint-modules (pairtools/split)
2m 9s
nf-core-lint-modules (plink/epistasis)
1m 29s
nf-core-lint-modules (narfmap/hashtable)
2m 4s
nf-core-lint-modules (diamond/blastp)
2m 17s
nf-core-lint-modules (last/train)
2m 9s
nf-core-lint-modules (staramr/search)
1m 7s
nf-core-lint-modules (diamond/blastx)
2m 9s
nf-core-lint-modules (biscuit/bsconv)
1m 59s
nf-core-lint-modules (tcoffee/tcs)
1m 9s
nf-core-lint-modules (plink/fastepistasis)
2m 22s
nf-core-lint-modules (last/lastal)
2m 15s
nf-core-lint-modules (plink/gwas)
2m 13s
nf-core-lint-modules (tabix/bgziptabix)
1m 10s
nf-core-lint-modules (last/dotplot)
2m 8s
nf-test (modules/nf-core/vardictjava, conda)
4m 5s
nf-core-lint-modules (pigz/compress)
2m 4s
nf-test (modules/nf-core/vardictjava, docker_self_hosted)
3m 10s
nf-core-lint-modules (narfmap/align)
1m 56s
nf-test (modules/nf-core/vardictjava, singularity)
5m 7s
nf-core-lint-modules (tcoffee/irmsd)
1m 12s
nf-test (modules/nf-core/windowmasker/mkcounts, conda)
3m 55s
nf-core-lint-modules (last/split)
2m 3s
nf-test (modules/nf-core/windowmasker/mkcounts, docker_self_hosted)
1m 44s
nf-core-lint-modules (scimap/spatiallda)
1m 19s
nf-test (modules/nf-core/windowmasker/mkcounts, singularity)
1m 39s
nf-core-lint-modules (mash/sketch)
1m 10s
nf-test (modules/nf-core/picard/crosscheckfingerprints, conda)
3m 46s
nf-core-lint-modules (pear)
1m 55s
nf-core-lint-modules (plink/hwe)
1m 12s
nf-test (modules/nf-core/picard/crosscheckfingerprints, docker_self_hosted)
2m 51s
nf-core-lint-modules (last/lastdb)
2m 36s
nf-test (modules/nf-core/picard/crosscheckfingerprints, singularity)
2m 31s
nf-core-lint-modules (picard/collecthsmetrics)
2m 19s
nf-test (modules/nf-core/kalign/align, conda)
3m 52s
nf-core-lint-modules (picard/extractfingerprint)
2m 5s
nf-test (modules/nf-core/kalign/align, docker_self_hosted)
16s
nf-test (modules/nf-core/kalign/align, singularity)
1m 28s
nf-core-lint-modules (last/mafconvert)
2m 10s
nf-test (modules/nf-core/windowmasker/convert, conda)
5m 33s
nf-core-lint-modules (svdb/query)
2m 3s
nf-test (modules/nf-core/windowmasker/convert, docker_self_hosted)
2m 28s
nf-core-lint-modules (metamaps/classify)
1m 7s
nf-test (modules/nf-core/windowmasker/convert, singularity)
2m 41s
nf-core-lint-modules (fastani)
1m 56s
nf-test (modules/nf-core/last/postmask, conda)
4m 7s
nf-test (modules/nf-core/last/postmask, docker_self_hosted)
1m 35s
nf-test (modules/nf-core/last/postmask, singularity)
1m 44s
nf-test (modules/nf-core/happy/prepy, conda)
6m 59s
nf-test (modules/nf-core/happy/prepy, docker_self_hosted)
2m 48s
nf-test (modules/nf-core/happy/prepy, singularity)
2m 27s
nf-test (modules/nf-core/plink/ld, conda)
1s
nf-test (modules/nf-core/plink/ld, docker_self_hosted)
1m 31s
nf-test (modules/nf-core/plink/ld, singularity)
2m 22s
nf-test (modules/nf-core/happy/ftxpy, conda)
5m 42s
nf-test (modules/nf-core/happy/ftxpy, docker_self_hosted)
2m 24s
nf-test (modules/nf-core/happy/ftxpy, singularity)
2m 53s
nf-test (modules/nf-core/prokka, conda)
5m 44s
nf-test (modules/nf-core/prokka, docker_self_hosted)
2m 38s
nf-test (modules/nf-core/prokka, singularity)
7m 6s
nf-test (modules/nf-core/survivor/bedpetovcf, conda)
3m 12s
nf-test (modules/nf-core/survivor/bedpetovcf, docker_self_hosted)
1m 18s
nf-test (modules/nf-core/survivor/bedpetovcf, singularity)
1m 11s
nf-test (modules/nf-core/mash/screen, conda)
4m 8s
nf-test (modules/nf-core/mash/screen, docker_self_hosted)
1m 13s
nf-test (modules/nf-core/mash/screen, singularity)
1m 17s
nf-test (modules/nf-core/eggnogmapper, conda)
53s
nf-test (modules/nf-core/eggnogmapper, docker_self_hosted)
2m 55s
nf-test (modules/nf-core/eggnogmapper, singularity)
3m 54s
nf-test (modules/nf-core/last/mafswap, conda)
2m 22s
nf-test (modules/nf-core/last/mafswap, docker_self_hosted)
1s
nf-test (modules/nf-core/last/mafswap, singularity)
2m 25s
nf-test (modules/nf-core/checkqc, docker_self_hosted)
2m 28s
nf-test (modules/nf-core/checkqc, singularity)
3m 14s
nf-test (modules/nf-core/bedops/convert2bed, conda)
3m 5s
nf-test (modules/nf-core/bedops/convert2bed, docker_self_hosted)
1m 18s
nf-test (modules/nf-core/bedops/convert2bed, singularity)
1m 24s
nf-test (modules/nf-core/antismash/antismashlite, conda)
14m 37s
nf-test (modules/nf-core/antismash/antismashlite, docker_self_hosted)
12m 46s
nf-test (modules/nf-core/antismash/antismashlite, singularity)
14m 41s
nf-test (modules/nf-core/mapad/map, conda)
2m 50s
nf-test (modules/nf-core/mapad/map, docker_self_hosted)
1m 27s
nf-test (modules/nf-core/mapad/map, singularity)
1m 5s
nf-test (modules/nf-core/tiddit/cov, conda)
6m 35s
nf-test (modules/nf-core/tiddit/cov, docker_self_hosted)
2m 22s
nf-test (modules/nf-core/tiddit/cov, singularity)
2m 29s
nf-test (modules/nf-core/bclconvert, docker_self_hosted)
1m 13s
nf-test (modules/nf-core/bclconvert, singularity)
1m 53s
nf-test (modules/nf-core/smoothxg, conda)
3m 26s
nf-test (modules/nf-core/smoothxg, docker_self_hosted)
1m 12s
nf-test (modules/nf-core/smoothxg, singularity)
2m 0s
nf-test (modules/nf-core/nanofilt, conda)
4m 15s
nf-test (modules/nf-core/nanofilt, docker_self_hosted)
2m 25s
nf-test (modules/nf-core/nanofilt, singularity)
2m 10s
nf-test (modules/nf-core/survivor/stats, conda)
2m 48s
nf-test (modules/nf-core/survivor/stats, docker_self_hosted)
1m 9s
nf-test (modules/nf-core/survivor/stats, singularity)
1m 12s
nf-test (modules/nf-core/gmmdemux, conda)
4m 46s
nf-test (modules/nf-core/gmmdemux, docker_self_hosted)
2m 2s
nf-test (modules/nf-core/gmmdemux, singularity)
2m 3s
nf-test (modules/nf-core/tabix/tabix, conda)
5m 13s
nf-test (modules/nf-core/tabix/tabix, docker_self_hosted)
2m 49s
nf-test (modules/nf-core/tabix/tabix, singularity)
2m 14s
nf-test (modules/nf-core/pyrodigal, conda)
6m 26s
nf-test (modules/nf-core/pyrodigal, docker_self_hosted)
1m 51s
nf-test (modules/nf-core/pyrodigal, singularity)
2m 4s
nf-test (modules/nf-core/pigz/uncompress, conda)
2m 49s
nf-test (modules/nf-core/pigz/uncompress, docker_self_hosted)
51s
nf-test (modules/nf-core/pigz/uncompress, singularity)
52s
nf-test (modules/nf-core/windowmasker/ustat, conda)
4m 10s
nf-test (modules/nf-core/windowmasker/ustat, docker_self_hosted)
1m 50s
nf-test (modules/nf-core/windowmasker/ustat, singularity)
4m 18s
nf-test (modules/nf-core/paraphase, conda)
6m 39s
nf-test (modules/nf-core/paraphase, docker_self_hosted)
3m 3s
nf-test (modules/nf-core/paraphase, singularity)
3m 39s
nf-test (subworkflows/nf-core/bam_qc_picard, conda)
8m 9s
nf-test (subworkflows/nf-core/bam_qc_picard, docker_self_hosted)
3m 47s
nf-test (subworkflows/nf-core/bam_qc_picard, singularity)
6m 23s
nf-test (modules/nf-core/biscuit/align, conda)
3m 30s
nf-test (modules/nf-core/biscuit/align, docker_self_hosted)
1m 42s
nf-test (modules/nf-core/biscuit/align, singularity)
2m 0s
nf-test (subworkflows/nf-core/fastq_align_mapad, conda)
3m 32s
nf-test (subworkflows/nf-core/fastq_align_mapad, docker_self_hosted)
1m 13s
nf-test (subworkflows/nf-core/fastq_align_mapad, singularity)
2m 3s
nf-test (modules/nf-core/porechop/abi, conda)
3m 49s
nf-test (modules/nf-core/porechop/abi, docker_self_hosted)
2m 2s
nf-test (modules/nf-core/porechop/abi, singularity)
2m 18s
nf-test (modules/nf-core/lima, conda)
6m 41s
nf-test (modules/nf-core/lima, docker_self_hosted)
3m 22s
nf-test (modules/nf-core/lima, singularity)
3m 51s
nf-test (modules/nf-core/presto/filterseq, conda)
3m 52s
nf-test (modules/nf-core/presto/filterseq, docker_self_hosted)
2m 20s
nf-test (modules/nf-core/presto/filterseq, singularity)
2m 13s
nf-test (modules/nf-core/tabix/bgzip, conda)
4m 50s
nf-test (modules/nf-core/tabix/bgzip, docker_self_hosted)
1m 53s
nf-test (modules/nf-core/tabix/bgzip, singularity)
2m 32s
nf-test (modules/nf-core/diamond/makedb, conda)
4m 35s
nf-test (modules/nf-core/diamond/makedb, docker_self_hosted)
1m 57s
nf-test (modules/nf-core/diamond/makedb, singularity)
2m 10s
nf-test (modules/nf-core/metamaps/mapdirectly, conda)
4m 46s
nf-test (modules/nf-core/metamaps/mapdirectly, docker_self_hosted)
2m 25s
nf-test (modules/nf-core/metamaps/mapdirectly, singularity)
4m 55s
nf-test (modules/nf-core/bedops/gtf2bed, conda)
3m 2s
nf-test (modules/nf-core/bedops/gtf2bed, docker_self_hosted)
1m 20s
nf-test (modules/nf-core/bedops/gtf2bed, singularity)
1m 23s
nf-test (modules/nf-core/chewbbaca/createschema, conda)
6m 43s
nf-test (modules/nf-core/chewbbaca/createschema, docker_self_hosted)
3m 8s
nf-test (modules/nf-core/chewbbaca/createschema, singularity)
3m 42s
nf-test (modules/nf-core/pairtools/split, conda)
4m 12s
nf-test (modules/nf-core/pairtools/split, docker_self_hosted)
2m 0s
nf-test (modules/nf-core/pairtools/split, singularity)
2m 22s
nf-test (modules/nf-core/plink/epistasis, conda)
5m 11s
nf-test (modules/nf-core/plink/epistasis, docker_self_hosted)
2m 0s
nf-test (modules/nf-core/plink/epistasis, singularity)
2m 0s
nf-test (modules/nf-core/narfmap/hashtable, conda)
3m 31s
nf-test (modules/nf-core/narfmap/hashtable, docker_self_hosted)
4m 55s
nf-test (modules/nf-core/narfmap/hashtable, singularity)
2m 27s
nf-test (modules/nf-core/diamond/blastp, conda)
5m 30s
nf-test (modules/nf-core/diamond/blastp, docker_self_hosted)
2m 6s
nf-test (modules/nf-core/diamond/blastp, singularity)
2m 10s
nf-test (modules/nf-core/last/train, conda)
4m 34s
nf-test (modules/nf-core/last/train, docker_self_hosted)
1m 45s
nf-test (modules/nf-core/last/train, singularity)
2m 46s
nf-test (modules/nf-core/staramr/search, conda)
6m 19s
nf-test (modules/nf-core/staramr/search, docker_self_hosted)
3m 12s
nf-test (modules/nf-core/staramr/search, singularity)
4m 3s
nf-test (modules/nf-core/diamond/blastx, conda)
4m 21s
nf-test (modules/nf-core/diamond/blastx, docker_self_hosted)
1m 56s
nf-test (modules/nf-core/diamond/blastx, singularity)
1m 57s
nf-test (modules/nf-core/biscuit/bsconv, conda)
3m 22s
nf-test (modules/nf-core/biscuit/bsconv, docker_self_hosted)
1m 22s
nf-test (modules/nf-core/biscuit/bsconv, singularity)
1m 31s
nf-test (modules/nf-core/tcoffee/tcs, conda)
8m 30s
nf-test (modules/nf-core/tcoffee/tcs, docker_self_hosted)
3m 57s
nf-test (modules/nf-core/tcoffee/tcs, singularity)
7m 2s
nf-test (modules/nf-core/plink/fastepistasis, conda)
4m 15s
nf-test (modules/nf-core/plink/fastepistasis, docker_self_hosted)
2m 1s
nf-test (modules/nf-core/plink/fastepistasis, singularity)
2m 53s
nf-test (modules/nf-core/last/lastal, conda)
1s
nf-test (modules/nf-core/last/lastal, docker_self_hosted)
2m 3s
nf-test (modules/nf-core/last/lastal, singularity)
2m 39s
nf-test (modules/nf-core/plink/gwas, conda)
4m 9s
nf-test (modules/nf-core/plink/gwas, docker_self_hosted)
1m 58s
nf-test (modules/nf-core/plink/gwas, singularity)
2m 7s
nf-test (modules/nf-core/tabix/bgziptabix, conda)
3m 23s
nf-test (modules/nf-core/tabix/bgziptabix, docker_self_hosted)
1m 26s
nf-test (modules/nf-core/tabix/bgziptabix, singularity)
1m 45s
nf-test (modules/nf-core/last/dotplot, conda)
4m 0s
nf-test (modules/nf-core/last/dotplot, docker_self_hosted)
2m 26s
nf-test (modules/nf-core/last/dotplot, singularity)
2m 39s
nf-test (modules/nf-core/pigz/compress, conda)
3m 23s
nf-test (modules/nf-core/pigz/compress, docker_self_hosted)
1m 46s
nf-test (modules/nf-core/pigz/compress, singularity)
2m 2s
nf-test (modules/nf-core/narfmap/align, conda)
11m 1s
nf-test (modules/nf-core/narfmap/align, docker_self_hosted)
10m 55s
nf-test (modules/nf-core/narfmap/align, singularity)
5m 9s
nf-test (modules/nf-core/tcoffee/irmsd, conda)
8m 26s
nf-test (modules/nf-core/tcoffee/irmsd, docker_self_hosted)
4m 13s
nf-test (modules/nf-core/tcoffee/irmsd, singularity)
7m 23s
nf-test (modules/nf-core/last/split, conda)
3m 32s
nf-test (modules/nf-core/last/split, docker_self_hosted)
2m 14s
nf-test (modules/nf-core/last/split, singularity)
1m 25s
nf-test (modules/nf-core/scimap/spatiallda, docker_self_hosted)
5m 26s
nf-test (modules/nf-core/scimap/spatiallda, singularity)
8m 28s
nf-test (modules/nf-core/mash/sketch, conda)
3m 54s
nf-test (modules/nf-core/mash/sketch, docker_self_hosted)
1m 15s
nf-test (modules/nf-core/mash/sketch, singularity)
1m 10s
nf-test (modules/nf-core/pear, conda)
2m 31s
nf-test (modules/nf-core/pear, docker_self_hosted)
50s
nf-test (modules/nf-core/pear, singularity)
1m 43s
nf-test (modules/nf-core/plink/hwe, conda)
3m 50s
nf-test (modules/nf-core/plink/hwe, docker_self_hosted)
1m 24s
nf-test (modules/nf-core/plink/hwe, singularity)
1m 23s
nf-test (modules/nf-core/last/lastdb, conda)
3m 48s
nf-test (modules/nf-core/last/lastdb, docker_self_hosted)
1m 46s
nf-test (modules/nf-core/last/lastdb, singularity)
1m 56s
nf-test (modules/nf-core/picard/collecthsmetrics, conda)
7m 30s
nf-test (modules/nf-core/picard/collecthsmetrics, docker_self_hosted)
4m 53s
nf-test (modules/nf-core/picard/collecthsmetrics, singularity)
9m 10s
nf-test (modules/nf-core/picard/extractfingerprint, conda)
3m 14s
nf-test (modules/nf-core/picard/extractfingerprint, docker_self_hosted)
2m 22s
nf-test (modules/nf-core/picard/extractfingerprint, singularity)
6m 11s
nf-test (modules/nf-core/last/mafconvert, conda)
3m 30s
nf-test (modules/nf-core/last/mafconvert, docker_self_hosted)
2m 4s
nf-test (modules/nf-core/last/mafconvert, singularity)
2m 39s
nf-test (modules/nf-core/svdb/query, conda)
2m 44s
nf-test (modules/nf-core/svdb/query, docker_self_hosted)
1m 10s
nf-test (modules/nf-core/svdb/query, singularity)
2m 13s
nf-test (modules/nf-core/metamaps/classify, conda)
7m 16s
nf-test (modules/nf-core/metamaps/classify, docker_self_hosted)
3m 2s
nf-test (modules/nf-core/metamaps/classify, singularity)
2m 58s
nf-test (modules/nf-core/fastani, conda)
3m 58s
nf-test (modules/nf-core/fastani, docker_self_hosted)
1m 25s
nf-test (modules/nf-core/fastani, singularity)
1m 18s
nf-test (subworkflows/nf-core/bcl_demultiplex, docker_self_hosted)
2m 27s
nf-test (subworkflows/nf-core/bcl_demultiplex, singularity)
2m 36s
confirm-pass
1s
13h 34m 4s