Skip to content

Update ichorcna to v0.5.1 and nf-test #12837

Update ichorcna to v0.5.1 and nf-test

Update ichorcna to v0.5.1 and nf-test #12837

Triggered via pull request August 1, 2024 13:06
Status Cancelled
Total duration 1m 17s
Artifacts

test.yml

on: pull_request
nf-test-changes
36s
nf-test-changes
pytest-changes
6s
pytest-changes
pre-commit
56s
pre-commit
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
Waiting for pending jobs
confirm-pass
2s
confirm-pass
Fit to window
Zoom out
Zoom in

Annotations

43 errors and 2 warnings
editorconfig
Process completed with exit code 1.
nf-test (modules/nf-core/ichorcna/run, conda)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-test (modules/nf-core/ichorcna/createpon, conda)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-test (modules/nf-core/ichorcna/createpon, singularity)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-test (modules/nf-core/ichorcna/run, singularity)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-test (modules/nf-core/ichorcna/createpon, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (bam_cnv_wisecondorx)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (bam_cnv_wisecondorx)
The operation was canceled.
nf-core-lint-modules (bam_docounts_contamination_angsd)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (bam_docounts_contamination_angsd)
A task was canceled.
nf-core-lint-modules (bam_markduplicates_samtools)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (bam_markduplicates_samtools)
A task was canceled.
nf-core-lint-modules (fastq_create_umi_consensus_fgbio)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (fastq_create_umi_consensus_fgbio)
The operation was canceled.
nf-core-lint-modules (bam_split_by_region)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (bam_split_by_region)
The operation was canceled.
nf-core-lint-modules (ichorcna/createpon)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (ichorcna/createpon)
The operation was canceled.
nf-core-lint-modules (vcf_gather_bcftools)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (vcf_gather_bcftools)
The operation was canceled.
nf-core-lint-modules (bam_ngscheckmate)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (bam_ngscheckmate)
A task was canceled.
nf-core-lint-modules (bam_variant_calling_sort_freebayes_bcftools)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (vcf_phase_shapeit5)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (vcf_phase_shapeit5)
A task was canceled.
nf-core-lint-modules (fasta_clean_fcs)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (fasta_clean_fcs)
A task was canceled.
nf-core-lint-modules (fastq_align_bwaaln)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (fastq_align_bwaaln)
A task was canceled.
nf-core-lint-modules (ichorcna/run)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (ichorcna/run)
A task was canceled.
nf-core-lint-modules (bed_scatter_bedtools)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (bed_scatter_bedtools)
A task was canceled.
nf-core-lint-modules (utils_nfcore_pipeline)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-core-lint-modules (utils_nfcore_pipeline)
A task was canceled.
nf-test (modules/nf-core/ichorcna/run, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6079' exists
nf-test (modules/nf-core/ichorcna/run, docker_self_hosted)
The operation was canceled.
pre-commit
Canceling since a higher priority waiting request for 'Run tests-6079' exists
prettier
Canceling since a higher priority waiting request for 'Run tests-6079' exists
prettier
The operation was canceled.
confirm-pass
Process completed with exit code 1.
Run tests
Strategy expansion exceeded 256 results for job 'pytest'
pytest-changes
The following actions uses Node.js version which is deprecated and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.