Conda: Remove defaults. Batch 6 #11497
ewelstest.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
4s
Annotations
108 errors and 2 warnings
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pytest (umitools/group, docker)
Process completed with exit code 1.
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pytest (umitools/group, docker)
Process completed with exit code 1.
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pytest (umitools/group, singularity)
Process completed with exit code 1.
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pytest (umitools/group, singularity)
Process completed with exit code 1.
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pytest (vcflib/vcfbreakmulti, docker)
Process completed with exit code 1.
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pytest (vcflib/vcfbreakmulti, docker)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (vcflib/vcfbreakmulti, docker)
Process completed with exit code 1.
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pytest (vcflib/vcffilter, singularity)
Process completed with exit code 1.
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pytest (vcflib/vcffilter, singularity)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (vcflib/vcffilter, singularity)
Process completed with exit code 1.
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pytest (vcflib/vcffilter, docker)
Process completed with exit code 1.
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pytest (vcflib/vcffilter, docker)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (vcflib/vcffilter, docker)
Process completed with exit code 1.
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pytest (vcflib/vcfbreakmulti, singularity)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (vcflib/vcfbreakmulti, singularity)
Process completed with exit code 1.
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pytest (vcflib/vcfbreakmulti, singularity)
Process completed with exit code 1.
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pytest (vcflib/vcffilter, conda)
Process completed with exit code 1.
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pytest (vcflib/vcffilter, conda)
Process completed with exit code 1.
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pytest (vcflib/vcffilter, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (umitools/group, conda)
Process completed with exit code 1.
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pytest (umitools/group, conda)
Process completed with exit code 1.
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pytest (vcflib/vcfuniq, docker)
Process completed with exit code 1.
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pytest (vcflib/vcfuniq, docker)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (vcflib/vcfuniq, docker)
Process completed with exit code 1.
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pytest (vcflib/vcfuniq, singularity)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (vcflib/vcfuniq, singularity)
Process completed with exit code 1.
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pytest (vcflib/vcfuniq, singularity)
Process completed with exit code 1.
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pytest (vcflib/vcfbreakmulti, conda)
Process completed with exit code 1.
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pytest (vcflib/vcfbreakmulti, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (vcflib/vcfbreakmulti, conda)
Process completed with exit code 1.
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pytest (vcflib/vcfuniq, conda)
Process completed with exit code 1.
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pytest (vcflib/vcfuniq, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (vcflib/vcfuniq, conda)
Process completed with exit code 1.
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pytest (ultra/pipeline, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (ultra/pipeline, conda)
Process completed with exit code 1.
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pytest (ultra/pipeline, conda)
Process completed with exit code 1.
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pytest (yara/mapper, singularity)
Process completed with exit code 1.
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pytest (yara/mapper, singularity)
Process completed with exit code 1.
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pytest (yara/mapper, singularity)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (whamg, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (whamg, conda)
Process completed with exit code 1.
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pytest (whamg, conda)
Process completed with exit code 1.
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pytest (vrhyme/vrhyme, conda)
Process completed with exit code 1.
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pytest (vrhyme/vrhyme, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (vrhyme/vrhyme, conda)
Process completed with exit code 1.
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nf-core-lint-modules (centrifuge/centrifuge)
Process completed with exit code 1.
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nf-core-lint-modules (centrifuge/kreport)
Process completed with exit code 1.
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nf-core-lint-modules (cellranger/mkfastq)
Process completed with exit code 1.
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nf-core-lint-modules (controlfreec/freec)
Process completed with exit code 1.
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nf-core-lint-modules (gatk4/genomicsdbimport)
Process completed with exit code 1.
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nf-core-lint-modules (mmseqs/linclust)
Process completed with exit code 1.
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nf-core-lint-modules (vcf2cytosure)
Process completed with exit code 1.
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nf-core-lint-modules (rtgtools/rocplot)
Process completed with exit code 1.
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nf-core-lint-modules (vardictjava)
Process completed with exit code 1.
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nf-core-lint-modules (velocyto)
Process completed with exit code 1.
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nf-core-lint-modules (unicycler)
Process completed with exit code 1.
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nf-core-lint-modules (viennarna/rnacofold)
Process completed with exit code 1.
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nf-core-lint-modules (checkv/updatedatabase)
Process completed with exit code 1.
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nf-core-lint-modules (viennarna/rnalfold)
Process completed with exit code 1.
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nf-core-lint-modules (umitools/extract)
Process completed with exit code 1.
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nf-core-lint-modules (vcfanno)
Process completed with exit code 1.
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nf-core-lint-modules (untar)
Process completed with exit code 1.
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nf-core-lint-modules (vcflib/vcffixup)
Process completed with exit code 1.
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nf-core-lint-modules (umitools/prepareforrsem)
Process completed with exit code 1.
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nf-core-lint-modules (umicollapse)
Process completed with exit code 1.
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nf-core-lint-modules (windowmasker/convert)
Process completed with exit code 1.
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nf-core-lint-modules (vcftools)
Process completed with exit code 1.
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nf-core-lint-modules (wisecondorx/predict)
Process completed with exit code 1.
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nf-core-lint-modules (vireo)
Process completed with exit code 1.
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nf-core-lint-modules (windowmasker/mkcounts)
Process completed with exit code 1.
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nf-core-lint-modules (wisecondorx/gender)
Process completed with exit code 1.
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nf-core-lint-modules (vsearch/cluster)
Process completed with exit code 1.
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nf-core-lint-modules (viennarna/rnafold)
Process completed with exit code 1.
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nf-core-lint-modules (xz/decompress)
Process completed with exit code 1.
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nf-core-lint-modules (windowmasker/ustat)
Process completed with exit code 1.
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nf-core-lint-modules (wisecondorx/newref)
Process completed with exit code 1.
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nf-core-lint-modules (xz/compress)
Process completed with exit code 1.
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nf-core-lint-modules (zip)
Process completed with exit code 1.
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nf-core-lint-modules (xengsort/index)
Process completed with exit code 1.
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nf-core-lint-modules (vsearch/sort)
Process completed with exit code 1.
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nf-core-lint-modules (wfmash)
Process completed with exit code 1.
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nf-core-lint-modules (wittyer)
Process completed with exit code 1.
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nf-core-lint-modules (mmseqs/createindex)
Process completed with exit code 1.
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nf-core-lint-modules (umitools/dedup)
Process completed with exit code 1.
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nf-core-lint-modules (vcf2db)
Process completed with exit code 1.
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pytest (vrhyme/linkbins, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (vrhyme/linkbins, conda)
Process completed with exit code 1.
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pytest (vrhyme/linkbins, conda)
Process completed with exit code 1.
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nf-core-lint-modules (wisecondorx/convert)
Process completed with exit code 1.
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pytest (vcf2maf, conda)
Process completed with exit code 1.
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pytest (vcf2maf, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (vcf2maf, conda)
Process completed with exit code 1.
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nf-test (modules/nf-core/centrifuge/kreport, docker_self_hosted)
Process completed with exit code 1.
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nf-test (modules/nf-core/centrifuge/centrifuge, docker_self_hosted)
Process completed with exit code 1.
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nf-test (modules/nf-core/checkv/updatedatabase, docker_self_hosted)
Process completed with exit code 1.
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nf-test (modules/nf-core/mmseqs/linclust, conda)
Process completed with exit code 1.
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pytest (vrhyme/extractunbinned, conda)
Process completed with exit code 1.
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pytest (vrhyme/extractunbinned, conda)
Process completed with exit code 1.
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pytest (vrhyme/extractunbinned, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (universc, docker)
Process completed with exit code 1.
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pytest (universc, docker)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (universc, docker)
Process completed with exit code 1.
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nf-test (modules/nf-core/wittyer, docker_self_hosted)
Process completed with exit code 1.
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nf-test (modules/nf-core/vcf2db, conda)
Process completed with exit code 1.
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nf-test (modules/nf-core/wittyer, singularity)
Process completed with exit code 1.
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nf-test (modules/nf-core/umitools/dedup, conda)
Process completed with exit code 1.
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nf-test (modules/nf-core/wisecondorx/convert, conda)
Process completed with exit code 1.
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confirm-pass
Process completed with exit code 1.
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pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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logs-conda-
Expired
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81.7 KB |
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logs-docker-
Expired
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85 KB |
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logs-singularity-
Expired
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82.5 KB |
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