Conda: Remove defaults. Batch 6 #11497

Run time

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Job	Run time
prettier	54s
editorconfig	10s
nf-test-changes	1m 9s
pre-commit	1m 2s
pytest-changes	5s
pytest (fqtk, conda)	4m 20s
pytest (fqtk, docker)	3m 46s
pytest (fqtk, singularity)	3m 34s
pytest (sgdemux, conda)	3m 27s
pytest (sgdemux, docker)	3m 18s
pytest (sgdemux, singularity)	3m 37s
pytest (ultra/pipeline, conda)	6m 39s
pytest (ultra/pipeline, docker)	4m 57s
pytest (ultra/pipeline, singularity)	4m 30s
pytest (ultraplex, conda)	6m 4s
pytest (ultraplex, docker)	4m 15s
pytest (ultraplex, singularity)	4m 21s
pytest (umitools/group, conda)	5m 36s
pytest (umitools/group, docker)	4m 1s
pytest (umitools/group, singularity)	5m 4s
pytest (universc, docker)	14m 36s
pytest (untarfiles, conda)	5m 38s
pytest (untarfiles, docker)	4m 12s
pytest (untarfiles, singularity)	4m 6s
pytest (unzip, conda)	3m 46s
pytest (unzip, docker)	3m 24s
pytest (unzip, singularity)	3m 41s
pytest (unzipfiles, conda)	3m 44s
pytest (unzipfiles, docker)	3m 35s
pytest (unzipfiles, singularity)	3m 18s
pytest (upd, conda)	5m 50s
pytest (upd, docker)	3m 56s
pytest (upd, singularity)	4m 55s
pytest (variantbam, conda)	3m 57s
pytest (variantbam, docker)	3m 17s
pytest (variantbam, singularity)	3m 35s
pytest (varlociraptor/callvariants, conda)	9m 21s
pytest (varlociraptor/callvariants, docker)	4m 27s
pytest (varlociraptor/callvariants, singularity)	4m 28s
pytest (varlociraptor/estimatealignmentproperties, conda)	3m 46s
pytest (varlociraptor/estimatealignmentproperties, docker)	3m 25s
pytest (varlociraptor/estimatealignmentproperties, singularity)	3m 36s
pytest (varlociraptor/preprocess, conda)	4m 9s
pytest (varlociraptor/preprocess, docker)	3m 20s
pytest (varlociraptor/preprocess, singularity)	3m 34s
pytest (vcf2maf, conda)	11m 16s
pytest (vcf2maf, docker)	4m 24s
pytest (vcf2maf, singularity)	5m 1s
pytest (vcflib/vcfbreakmulti, conda)	4m 45s
pytest (vcflib/vcfbreakmulti, docker)	3m 48s
pytest (vcflib/vcfbreakmulti, singularity)	3m 52s
pytest (vcflib/vcffilter, conda)	3m 55s
pytest (vcflib/vcffilter, docker)	3m 36s
pytest (vcflib/vcffilter, singularity)	3m 30s
pytest (vcflib/vcfuniq, conda)	4m 9s
pytest (vcflib/vcfuniq, docker)	3m 36s
pytest (vcflib/vcfuniq, singularity)	3m 48s
pytest (verifybamid/verifybamid, conda)	3m 47s
pytest (verifybamid/verifybamid, docker)	3m 9s
pytest (verifybamid/verifybamid, singularity)	3m 37s
pytest (verifybamid/verifybamid2, conda)	6m 9s
pytest (verifybamid/verifybamid2, docker)	3m 57s
pytest (verifybamid/verifybamid2, singularity)	4m 24s
pytest (vg/construct, conda)	6m 20s
pytest (vg/construct, docker)	4m 12s
pytest (vg/construct, singularity)	4m 46s
pytest (vg/deconstruct, conda)	3m 50s
pytest (vg/deconstruct, docker)	3m 14s
pytest (vg/deconstruct, singularity)	3m 26s
pytest (vg/index, conda)	4m 19s
pytest (vg/index, docker)	3m 19s
pytest (vg/index, singularity)	4m 45s
pytest (vrhyme/extractunbinned, conda)	11m 15s
pytest (vrhyme/extractunbinned, docker)	6m 27s
pytest (vrhyme/extractunbinned, singularity)	6m 33s
pytest (vrhyme/linkbins, conda)	8m 55s
pytest (vrhyme/linkbins, docker)	6m 17s
pytest (vrhyme/linkbins, singularity)	5m 26s
pytest (vrhyme/vrhyme, conda)	7m 5s
pytest (vrhyme/vrhyme, docker)	5m 43s
pytest (vrhyme/vrhyme, singularity)	7m 24s
pytest (vsearch/sintax, conda)	3m 39s
pytest (vsearch/sintax, docker)	3m 22s
pytest (vsearch/sintax, singularity)	3m 39s
pytest (vsearch/usearchglobal, conda)	6m 20s
pytest (vsearch/usearchglobal, docker)	4m 34s
pytest (vsearch/usearchglobal, singularity)	4m 45s
pytest (vt/decompose, docker)	3m 47s
pytest (vt/decompose, singularity)	3m 58s
pytest (vt/normalize, conda)	5m 34s
pytest (vt/normalize, docker)	3m 55s
pytest (vt/normalize, singularity)	3m 23s
pytest (wgsim, conda)	3m 58s
pytest (wgsim, docker)	3m 31s
pytest (wgsim, singularity)	2m 30s
pytest (whamg, conda)	3m 57s
pytest (whamg, docker)	3m 58s
pytest (whamg, singularity)	3m 48s
pytest (yahs, conda)	2m 54s
pytest (yahs, docker)	2m 32s
pytest (yahs, singularity)	2m 51s
pytest (yara/index, conda)	4m 1s
pytest (yara/index, docker)	2m 26s
pytest (yara/index, singularity)	2m 50s
pytest (yara/mapper, conda)	5m 59s
pytest (yara/mapper, docker)	3m 16s
pytest (yara/mapper, singularity)	3m 20s
nf-core-lint-modules (fastq_fastqc_umitools_trimgalore)	48s
nf-core-lint-modules (bam_dedup_stats_samtools_umitools)	56s
nf-core-lint-modules (fastq_fastqc_umitools_fastp)	58s
nf-core-lint-modules (fastq_extract_kraken_krakentools)	55s
nf-core-lint-modules (bam_dedup_stats_samtools_umicollapse)	1m 1s
nf-core-lint-modules (wittyer)	1m 41s
nf-core-lint-modules (centrifuge/centrifuge)	1m 21s
nf-core-lint-modules (controlfreec/freec2bed)	1m 23s
nf-core-lint-modules (umitools/extract)	1m 27s
nf-core-lint-modules (untar)	1m 27s
nf-core-lint-modules (last/train)	1m 38s
nf-core-lint-modules (controlfreec/makegraph2)	1m 26s
nf-core-lint-modules (umitools/prepareforrsem)	1m 29s
nf-core-lint-modules (resfinder/run)	1m 34s
nf-core-lint-modules (viennarna/rnafold)	1m 29s
nf-core-lint-modules (cellranger/mkfastq)	1m 25s
nf-core-lint-modules (wisecondorx/newref)	1m 29s
nf-core-lint-modules (wfmash)	1m 42s
nf-core-lint-modules (vcf2cytosure)	1m 19s
nf-core-lint-modules (controlfreec/assesssignificance)	1m 25s
nf-core-lint-modules (kraken2/kraken2)	2m 20s
nf-core-lint-modules (wisecondorx/predict)	1m 19s
nf-core-lint-modules (kmcp/profile)	1m 25s
nf-core-lint-modules (vcftools)	1m 27s
nf-core-lint-modules (rgi/main)	1m 19s
nf-core-lint-modules (controlfreec/makegraph)	1m 31s
nf-core-lint-modules (centrifuge/kreport)	1m 20s
nf-core-lint-modules (xz/compress)	1m 26s
nf-core-lint-modules (controlfreec/freec)	1m 26s
nf-core-lint-modules (vcflib/vcffixup)	1m 26s
nf-core-lint-modules (rtgtools/rocplot)	1m 27s
nf-core-lint-modules (umicollapse)	1m 32s
nf-core-lint-modules (checkv/updatedatabase)	1m 49s
nf-core-lint-modules (viennarna/rnacofold)	1m 19s
nf-core-lint-modules (umitools/dedup)	2m 20s
nf-core-lint-modules (vireo)	1m 26s
nf-core-lint-modules (wisecondorx/convert)	2m 31s
nf-core-lint-modules (mtmalign/align)	2m 37s
nf-core-lint-modules (rgi/cardannotation)	1m 23s
nf-core-lint-modules (windowmasker/ustat)	1m 28s
nf-core-lint-modules (tcoffee/irmsd)	1m 27s
nf-core-lint-modules (velocyto)	1m 20s
nf-core-lint-modules (custom/tx2gene)	1m 22s
nf-core-lint-modules (windowmasker/mkcounts)	1m 23s
nf-core-lint-modules (vsearch/sort)	1m 33s
nf-core-lint-modules (xz/decompress)	1m 24s
nf-core-lint-modules (wisecondorx/gender)	1m 22s
nf-core-lint-modules (vcf2db)	2m 22s
nf-core-lint-modules (last/lastal)	1m 42s
nf-core-lint-modules (bases2fastq)	1m 27s
nf-core-lint-modules (tximeta/tximport)	2m 3s
nf-core-lint-modules (tcoffee/align)	1m 22s
nf-core-lint-modules (summarizedexperiment/summarizedexperiment)	1m 24s
nf-core-lint-modules (unicycler)	1m 23s
nf-core-lint-modules (windowmasker/convert)	1m 22s
nf-core-lint-modules (xengsort/index)	1m 28s
nf-core-lint-modules (krakenuniq/preloadedkrakenuniq)	1m 28s
nf-core-lint-modules (gatk4/genomicsdbimport)	1m 25s
nf-core-lint-modules (controlfreec/freec2circos)	1m 25s
nf-core-lint-modules (krakentools/extractkrakenreads)	1m 23s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, conda)	9m 32s
nf-core-lint-modules (zip)	1m 26s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, docker_self_hosted)	5m 55s
nf-core-lint-modules (hamronization/rgi)	1m 21s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, singularity)	5m 41s
nf-core-lint-modules (checkv/endtoend)	1m 26s
nf-core-lint-modules (mmseqs/createindex)	2m 1s
nf-core-lint-modules (viennarna/rnalfold)	1m 20s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umitools, conda)	5m 58s
nf-core-lint-modules (metamaps/mapdirectly)	1m 32s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umitools, docker_self_hosted)	3m 10s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umitools, singularity)	3m 33s
nf-test (modules/nf-core/wittyer, docker_self_hosted)	3m 39s
nf-core-lint-modules (sratools/fasterqdump)	1m 30s
nf-core-lint-modules (vcfanno)	1m 24s
nf-test (modules/nf-core/wittyer, singularity)	4m 39s
nf-core-lint-modules (mmseqs/linclust)	1m 25s
nf-core-lint-modules (metamaps/classify)	1m 29s
nf-test (modules/nf-core/centrifuge/centrifuge, conda)	8m 12s
nf-test (modules/nf-core/centrifuge/centrifuge, docker_self_hosted)	3m 18s
nf-core-lint-modules (vsearch/cluster)	1m 26s
nf-test (modules/nf-core/centrifuge/centrifuge, singularity)	4m 0s
nf-core-lint-modules (vardictjava)	1m 20s
nf-test (modules/nf-core/controlfreec/freec2bed, conda)	10m 22s
nf-test (modules/nf-core/controlfreec/freec2bed, docker_self_hosted)	6m 39s
nf-test (modules/nf-core/controlfreec/freec2bed, singularity)	7m 40s
nf-test (modules/nf-core/umitools/extract, conda)	3m 27s
nf-test (modules/nf-core/umitools/extract, docker_self_hosted)	4m 13s
nf-test (modules/nf-core/umitools/extract, singularity)	4m 32s
nf-test (modules/nf-core/untar, conda)	3m 49s
nf-test (modules/nf-core/untar, docker_self_hosted)	3m 7s
nf-test (modules/nf-core/untar, singularity)	3m 2s
nf-test (modules/nf-core/last/train, conda)	5m 37s
nf-test (modules/nf-core/last/train, docker_self_hosted)	3m 36s
nf-test (modules/nf-core/last/train, singularity)	4m 26s
nf-test (modules/nf-core/controlfreec/makegraph2, conda)	10m 40s
nf-test (modules/nf-core/controlfreec/makegraph2, docker_self_hosted)	7m 25s
nf-test (modules/nf-core/controlfreec/makegraph2, singularity)	9m 52s
nf-test (modules/nf-core/umitools/prepareforrsem, conda)	4m 51s
nf-test (modules/nf-core/umitools/prepareforrsem, docker_self_hosted)	3m 28s
nf-test (modules/nf-core/umitools/prepareforrsem, singularity)	3m 55s
nf-test (modules/nf-core/resfinder/run, conda)	10m 16s
nf-test (modules/nf-core/resfinder/run, docker_self_hosted)	5m 8s
nf-test (modules/nf-core/resfinder/run, singularity)	6m 8s
nf-test (modules/nf-core/viennarna/rnafold, conda)	4m 27s
nf-test (modules/nf-core/viennarna/rnafold, docker_self_hosted)	3m 38s
nf-test (modules/nf-core/viennarna/rnafold, singularity)	3m 59s
nf-test (modules/nf-core/cellranger/mkfastq, docker_self_hosted)	8m 31s
nf-test (modules/nf-core/cellranger/mkfastq, singularity)	11m 38s
nf-test (modules/nf-core/wisecondorx/newref, conda)	4m 44s
nf-test (modules/nf-core/wisecondorx/newref, docker_self_hosted)	3m 30s
nf-test (modules/nf-core/wisecondorx/newref, singularity)	3m 29s
nf-test (modules/nf-core/wfmash, conda)	3m 18s
nf-test (modules/nf-core/wfmash, docker_self_hosted)	3m 45s
nf-test (modules/nf-core/wfmash, singularity)	3m 31s
nf-test (modules/nf-core/vcf2cytosure, conda)	4m 39s
nf-test (modules/nf-core/vcf2cytosure, docker_self_hosted)	3m 15s
nf-test (modules/nf-core/vcf2cytosure, singularity)	4m 2s
nf-test (modules/nf-core/controlfreec/assesssignificance, conda)	11m 3s
nf-test (modules/nf-core/controlfreec/assesssignificance, docker_self_hosted)	8m 20s
nf-test (modules/nf-core/controlfreec/assesssignificance, singularity)	9m 35s
nf-test (modules/nf-core/kraken2/kraken2, conda)	8m 48s
nf-test (modules/nf-core/kraken2/kraken2, docker_self_hosted)	3m 58s
nf-test (modules/nf-core/kraken2/kraken2, singularity)	4m 0s
nf-test (modules/nf-core/wisecondorx/predict, conda)	6m 4s
nf-test (modules/nf-core/wisecondorx/predict, docker_self_hosted)	4m 21s
nf-test (modules/nf-core/wisecondorx/predict, singularity)	5m 35s
nf-test (modules/nf-core/kmcp/profile, conda)	7m 18s
nf-test (modules/nf-core/kmcp/profile, docker_self_hosted)	3m 3s
nf-test (modules/nf-core/kmcp/profile, singularity)	3m 43s
nf-test (modules/nf-core/vcftools, conda)	6m 38s
nf-test (modules/nf-core/vcftools, docker_self_hosted)	4m 5s
nf-test (modules/nf-core/vcftools, singularity)	4m 14s
nf-test (modules/nf-core/rgi/main, conda)	21m 7s
nf-test (modules/nf-core/rgi/main, docker_self_hosted)	6m 39s
nf-test (modules/nf-core/rgi/main, singularity)	10m 23s
nf-test (modules/nf-core/controlfreec/makegraph, conda)	15m 36s
nf-test (modules/nf-core/controlfreec/makegraph, docker_self_hosted)	8m 44s
nf-test (modules/nf-core/controlfreec/makegraph, singularity)	9m 29s
nf-test (modules/nf-core/centrifuge/kreport, conda)	7m 5s
nf-test (modules/nf-core/centrifuge/kreport, docker_self_hosted)	3m 1s
nf-test (modules/nf-core/centrifuge/kreport, singularity)	3m 33s
nf-test (modules/nf-core/xz/compress, conda)	3m 28s
nf-test (modules/nf-core/xz/compress, docker_self_hosted)	2m 42s
nf-test (modules/nf-core/xz/compress, singularity)	2m 49s
nf-test (modules/nf-core/controlfreec/freec, conda)	8m 2s
nf-test (modules/nf-core/controlfreec/freec, docker_self_hosted)	7m 4s
nf-test (modules/nf-core/controlfreec/freec, singularity)	7m 27s
nf-test (modules/nf-core/vcflib/vcffixup, conda)	4m 10s
nf-test (modules/nf-core/vcflib/vcffixup, docker_self_hosted)	3m 44s
nf-test (modules/nf-core/vcflib/vcffixup, singularity)	3m 35s
nf-test (modules/nf-core/rtgtools/rocplot, conda)	4m 28s
nf-test (modules/nf-core/rtgtools/rocplot, docker_self_hosted)	3m 21s
nf-test (modules/nf-core/rtgtools/rocplot, singularity)	4m 38s
nf-test (modules/nf-core/umicollapse, conda)	14m 6s
nf-test (modules/nf-core/umicollapse, docker_self_hosted)	5m 42s
nf-test (modules/nf-core/umicollapse, singularity)	6m 6s
nf-test (modules/nf-core/checkv/updatedatabase, conda)	6m 44s
nf-test (modules/nf-core/checkv/updatedatabase, docker_self_hosted)	3m 32s
nf-test (modules/nf-core/checkv/updatedatabase, singularity)	4m 7s
nf-test (modules/nf-core/viennarna/rnacofold, conda)	5m 46s
nf-test (modules/nf-core/viennarna/rnacofold, docker_self_hosted)	3m 34s
nf-test (modules/nf-core/viennarna/rnacofold, singularity)	3m 27s
nf-test (modules/nf-core/umitools/dedup, conda)	7m 3s
nf-test (modules/nf-core/umitools/dedup, docker_self_hosted)	4m 21s
nf-test (modules/nf-core/umitools/dedup, singularity)	6m 39s
nf-test (modules/nf-core/vireo, conda)	5m 45s
nf-test (modules/nf-core/vireo, docker_self_hosted)	3m 41s
nf-test (modules/nf-core/vireo, singularity)	3m 40s
nf-test (modules/nf-core/wisecondorx/convert, conda)	6m 48s
nf-test (modules/nf-core/wisecondorx/convert, docker_self_hosted)	5m 53s
nf-test (modules/nf-core/wisecondorx/convert, singularity)	5m 46s
nf-test (modules/nf-core/mtmalign/align, conda)	5m 46s
nf-test (modules/nf-core/mtmalign/align, docker_self_hosted)	3m 25s
nf-test (modules/nf-core/mtmalign/align, singularity)	3m 44s
nf-test (modules/nf-core/rgi/cardannotation, conda)	11m 24s
nf-test (modules/nf-core/rgi/cardannotation, docker_self_hosted)	4m 42s
nf-test (modules/nf-core/rgi/cardannotation, singularity)	8m 44s
nf-test (modules/nf-core/windowmasker/ustat, conda)	6m 20s
nf-test (modules/nf-core/windowmasker/ustat, docker_self_hosted)	3m 41s
nf-test (modules/nf-core/windowmasker/ustat, singularity)	3m 38s
nf-test (modules/nf-core/tcoffee/irmsd, conda)	9m 51s
nf-test (modules/nf-core/tcoffee/irmsd, docker_self_hosted)	6m 28s
nf-test (modules/nf-core/tcoffee/irmsd, singularity)	10m 39s
nf-test (modules/nf-core/velocyto, conda)	8m 5s
nf-test (modules/nf-core/velocyto, docker_self_hosted)	5m 2s
nf-test (modules/nf-core/velocyto, singularity)	6m 40s
nf-test (modules/nf-core/custom/tx2gene, conda)	5m 10s
nf-test (modules/nf-core/custom/tx2gene, docker_self_hosted)	3m 3s
nf-test (modules/nf-core/custom/tx2gene, singularity)	3m 19s
nf-test (modules/nf-core/windowmasker/mkcounts, conda)	4m 48s
nf-test (modules/nf-core/windowmasker/mkcounts, docker_self_hosted)	3m 40s
nf-test (modules/nf-core/windowmasker/mkcounts, singularity)	3m 52s
nf-test (modules/nf-core/vsearch/sort, conda)	3m 46s
nf-test (modules/nf-core/vsearch/sort, docker_self_hosted)	2m 47s
nf-test (modules/nf-core/vsearch/sort, singularity)	2m 53s
nf-test (modules/nf-core/xz/decompress, conda)	3m 55s
nf-test (modules/nf-core/xz/decompress, docker_self_hosted)	2m 34s
nf-test (modules/nf-core/xz/decompress, singularity)	2m 44s
nf-test (modules/nf-core/wisecondorx/gender, conda)	4m 48s
nf-test (modules/nf-core/wisecondorx/gender, docker_self_hosted)	4m 44s
nf-test (modules/nf-core/wisecondorx/gender, singularity)	4m 24s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, conda)	15m 44s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, docker_self_hosted)	8m 29s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, singularity)	7m 40s
nf-test (modules/nf-core/vcf2db, conda)	4m 52s
nf-test (modules/nf-core/vcf2db, docker_self_hosted)	4m 15s
nf-test (modules/nf-core/vcf2db, singularity)	4m 53s
nf-test (modules/nf-core/last/lastal, conda)	6m 37s
nf-test (modules/nf-core/last/lastal, docker_self_hosted)	4m 25s
nf-test (modules/nf-core/last/lastal, singularity)	5m 18s
nf-test (modules/nf-core/bases2fastq, docker_self_hosted)	4m 3s
nf-test (modules/nf-core/tximeta/tximport, conda)	12m 28s
nf-test (modules/nf-core/tximeta/tximport, docker_self_hosted)	7m 18s
nf-test (modules/nf-core/tximeta/tximport, singularity)	7m 55s
nf-test (modules/nf-core/tcoffee/align, conda)	13m 29s
nf-test (modules/nf-core/tcoffee/align, docker_self_hosted)	6m 19s
nf-test (modules/nf-core/tcoffee/align, singularity)	9m 40s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, conda)	35m 30s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, docker_self_hosted)	11m 49s
nf-test (modules/nf-core/summarizedexperiment/summarizedexperiment, singularity)	14m 54s
nf-test (modules/nf-core/unicycler, conda)	14m 13s
nf-test (modules/nf-core/unicycler, docker_self_hosted)	11m 16s
nf-test (modules/nf-core/unicycler, singularity)	14m 16s
nf-test (subworkflows/nf-core/fastq_extract_kraken_krakentools, conda)	10m 49s
nf-test (subworkflows/nf-core/fastq_extract_kraken_krakentools, docker_self_hosted)	3m 44s
nf-test (subworkflows/nf-core/fastq_extract_kraken_krakentools, singularity)	3m 18s
nf-test (modules/nf-core/windowmasker/convert, conda)	9m 2s
nf-test (modules/nf-core/windowmasker/convert, docker_self_hosted)	4m 15s
nf-test (modules/nf-core/windowmasker/convert, singularity)	4m 48s
nf-test (modules/nf-core/xengsort/index, conda)	3m 49s
nf-test (modules/nf-core/xengsort/index, docker_self_hosted)	4m 47s
nf-test (modules/nf-core/xengsort/index, singularity)	3m 20s
nf-test (modules/nf-core/krakenuniq/preloadedkrakenuniq, conda)	10m 25s
nf-test (modules/nf-core/krakenuniq/preloadedkrakenuniq, docker_self_hosted)	4m 45s
nf-test (modules/nf-core/krakenuniq/preloadedkrakenuniq, singularity)	5m 5s
nf-test (modules/nf-core/gatk4/genomicsdbimport, conda)	8m 14s
nf-test (modules/nf-core/gatk4/genomicsdbimport, docker_self_hosted)	5m 46s
nf-test (modules/nf-core/gatk4/genomicsdbimport, singularity)	7m 48s
nf-test (modules/nf-core/controlfreec/freec2circos, conda)	10m 28s
nf-test (modules/nf-core/controlfreec/freec2circos, docker_self_hosted)	7m 39s
nf-test (modules/nf-core/controlfreec/freec2circos, singularity)	11m 32s
nf-test (modules/nf-core/krakentools/extractkrakenreads, conda)	10m 6s
nf-test (modules/nf-core/krakentools/extractkrakenreads, docker_self_hosted)	5m 31s
nf-test (modules/nf-core/krakentools/extractkrakenreads, singularity)	5m 43s
nf-test (modules/nf-core/zip, conda)	2m 59s
nf-test (modules/nf-core/zip, docker_self_hosted)	2m 28s
nf-test (modules/nf-core/zip, singularity)	2m 24s
nf-test (modules/nf-core/hamronization/rgi, conda)	22m 9s
nf-test (modules/nf-core/hamronization/rgi, docker_self_hosted)	7m 13s
nf-test (modules/nf-core/hamronization/rgi, singularity)	9m 57s
nf-test (modules/nf-core/checkv/endtoend, conda)	7m 48s
nf-test (modules/nf-core/checkv/endtoend, docker_self_hosted)	4m 29s
nf-test (modules/nf-core/checkv/endtoend, singularity)	4m 11s
nf-test (modules/nf-core/mmseqs/createindex, conda)	3m 48s
nf-test (modules/nf-core/mmseqs/createindex, docker_self_hosted)	3m 47s
nf-test (modules/nf-core/mmseqs/createindex, singularity)	4m 4s
nf-test (modules/nf-core/viennarna/rnalfold, conda)	5m 3s
nf-test (modules/nf-core/viennarna/rnalfold, docker_self_hosted)	3m 20s
nf-test (modules/nf-core/viennarna/rnalfold, singularity)	3m 48s
nf-test (modules/nf-core/metamaps/mapdirectly, conda)	7m 26s
nf-test (modules/nf-core/metamaps/mapdirectly, docker_self_hosted)	4m 25s
nf-test (modules/nf-core/metamaps/mapdirectly, singularity)	4m 49s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse, conda)	9m 25s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse, docker_self_hosted)	4m 7s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse, singularity)	4m 23s
nf-test (modules/nf-core/sratools/fasterqdump, conda)	7m 57s
nf-test (modules/nf-core/sratools/fasterqdump, docker_self_hosted)	4m 45s
nf-test (modules/nf-core/sratools/fasterqdump, singularity)	4m 32s
nf-test (modules/nf-core/vcfanno, conda)	4m 44s
nf-test (modules/nf-core/vcfanno, docker_self_hosted)	3m 12s
nf-test (modules/nf-core/vcfanno, singularity)	3m 17s
nf-test (modules/nf-core/mmseqs/linclust, conda)	3m 33s
nf-test (modules/nf-core/mmseqs/linclust, docker_self_hosted)	2m 49s
nf-test (modules/nf-core/mmseqs/linclust, singularity)	2m 57s
nf-test (modules/nf-core/metamaps/classify, conda)	9m 25s
nf-test (modules/nf-core/metamaps/classify, docker_self_hosted)	4m 57s
nf-test (modules/nf-core/metamaps/classify, singularity)	4m 19s
nf-test (modules/nf-core/vsearch/cluster, conda)	6m 7s
nf-test (modules/nf-core/vsearch/cluster, docker_self_hosted)	3m 49s
nf-test (modules/nf-core/vsearch/cluster, singularity)	3m 54s
nf-test (modules/nf-core/vardictjava, conda)	4m 45s
nf-test (modules/nf-core/vardictjava, docker_self_hosted)	3m 58s
nf-test (modules/nf-core/vardictjava, singularity)	7m 29s
confirm-pass	4s
	1d 7h 26m 55s

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Conda: Remove defaults. Batch 6 #11497

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Conda: Remove defaults. Batch 6 #11497

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