CorrectAllCoordinates

#!/bin/sh
# modify pos file to move those coordinates near to the border


INPUT=$#
case $INPUT in
# if not enough data show help
 0) echo "$0 micrograph_name(s)"
    echo "Input extension tif, ouput extension corrected.pos" 
    echo "Important: do not forget the \"\" when using wildcards in the image name" 
 
          exit ;;
 *)
esac

for image in $1 ; do
 echo "micrograph= $image"
 name=`basename $image .tif`
 dir=`dirname $image`
 
 CorrectBorderForMark.py 80 $dir/$name.raw.inf $dir/$name.raw.Common.pos $dir/$name.raw.Common_corrected.pos
 
 

 done