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Ctf_estimate_from_psd_v31
Adjust a parametric model to a PSD file. The PSD is enhanced (See article). And finally, the CTF is fitted to the PSD, being guided by the enhanced PSD (See article).
See also Ctf_estimate_from_micrograph_v3 Ctf_enhance_psd_v3
Parameters
$``: PSD file
Downsampling $--downSamplingPerformed <F1>
CTF fit: Optimization constraints $--min_freq <fmin0.03> $--max_freq <fmax0.35> $--fastDefocus <lambda2> <size=10> $--defocus_range <D8000> $: Show optimization process $: By default, noise is astigmatic $--enhance_weight <w1> $--model_simplification <s0> $--bootstrapFit <N-1>
CTF fit: Output CTF models $--ctfmodelSize <size256>
PSD enhancement $: Bandpass cutoff. Normalized to 0.5 If fmax>0.35, f1 default=0.01 If fmax<0.35, f1 default=0.02 $: Bandpass cutoff. Normalized to 0.5. If fmax>0.35, f2 default=0.08 If fmax<0.35, f2 default=0.15
CTF description $: ctfparam file Parameters from this file are overriden by the parameters in the command line $: Angstroms/pixel. Ex: 1.4 This parameter is compulsory if a CTF is needed. $: Accelerating voltage (kV). Ex: 200 This parameter is compulsory if a CTF is needed. $: Milimiters. Ex: 5.6 This parameter is compulsory if a CTF is needed. $: Defocus in Angstroms (Ex: 2000) $: If astigmatic $--azimuthal_angle <ang0> $--chromatic_aberration <Ca0> $--energy_loss <espr0> $--lens_stability <ispr0> $--convergence_cone <alpha0> $--longitudinal_displace <DeltaF0> $--transversal_displace <DeltaR0> $--Q0 <Q00> $--K <K1>