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Release notes 2017 02

Pablo Moreno edited this page Mar 2, 2017 · 33 revisions

Release 2017-02 (beta) is the first public release of the PhenoMeNal services. It is the output of 1.5 years of the work conducted in the H2020 project PhenoMeNal which stands for Phenome and Metabolome aNalysis. Although properly tested and monitored using our continuous integration pipeline it should be used with caution.

Services added

Service Container Tag Maintainer Affiliation Docs
Galaxy v16.07-pheno P. Moreno, L. Pireddu, P. Roger Mele EMBL-EBI, CRS4, CEA
Jupyter v387f29b6ca83_cv0.4
Luigi v2.6.0_cv0.1 Marco Capuccinni Uppsala University

Container Tools added

Tool Container Tag Maintainer Affiliation Docs
ms-vfetc container-ms-vfetc v0.4_cv1.3 Michael van Vliet Leiden University docs
iso2flux container-iso2flux v0.2_cv1.0 Pablo Moreno EMBL-EBI
ramid container-ramid v1.0_cv0.1 Pablo Moreno EMBL-EBI
midcor container-midcor v1.0_cv0.2 Pablo Moreno EMBL-EBI
mtbls-dwnloader container-scp-aspera v3.5.4.102989-linux-64_cv0.1 Pablo Moreno EMBL-EBI
nmrml2isa container-nmrml2isa v0.3.0_cv0.1 P. Moreno, T. Lawson EMBL-EBI, U. of Birmingham
mzml2isa container-mzml2isa v0.4.28_cv0.2 P. Moreno, K. Peters EMBL-EBI, IPB Halle
Batman container-batman v1.2.1.0.7_cv1.0 P. Moreno, J. Gao EMBL-EBI, Imperial College London
metfrag-cli container-metfrag-cli v2.4.2_cv0.2 Kristian Peters IPB Halle
w4m - metabolights downloader
w4m - univariate [container-univariate] v2.2.3_cv1.2 Pierrick Roger Mele CEA
w4m - multivariate [container-multivariate] v2.3.10_cv1.1 Pierrick Roger Mele CEA
w4m - biosigner
w4m - LC/MS matching
Note: maintainers are for containers, not necessarily tool authors.

Additional supported workflows

Workflow Maintainer Affiliation Docs
Sacurine workflow Etienne Thévenot W4M docs
C13 Stationary Fluxomics

Additional supported cloud providers

Provider Docs
Google Cloud Platform portal/direct deployment
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