Release notes 2017 02
Release 2017-02 (beta) is the first public release of the PhenoMeNal services. It is the output of 1.5 years of the work conducted in the H2020 project PhenoMeNal which stands for Phenome and Metabolome aNalysis. Although properly tested and monitored using our continuous integration pipeline it should be used with caution.
| Service | Container | Tag | Maintainer | Affiliation | Docs |
|---|---|---|---|---|---|
| Galaxy | v16.07-pheno | P. Moreno, L. Pireddu, P. Roger Mele | EMBL-EBI, CRS4, CEA | ||
| Jupyter | v387f29b6ca83_cv0.4 | ||||
| Luigi | v2.6.0_cv0.1 | Marco Capuccini | Uppsala University |
| Tool | Container | Tag | Maintainer | Affiliation | Docs |
|---|---|---|---|---|---|
| ms-vfetc | container-ms-vfetc | v0.4_cv1.3 | Michael van Vliet | Leiden University | docs |
| iso2flux | container-iso2flux | v0.2_cv1.0 | Pablo Moreno | EMBL-EBI | |
| ramid | container-ramid | v1.0_cv0.1 | Pablo Moreno | EMBL-EBI | |
| midcor | container-midcor | v1.0_cv0.2 | Pablo Moreno | EMBL-EBI | |
| mtbls-dwnloader | container-scp-aspera | v3.5.4.102989-linux-64_cv0.1 | Pablo Moreno | EMBL-EBI | |
| nmrml2isa | container-nmrml2isa | v0.3.0_cv0.1 | P. Moreno, T. Lawson | EMBL-EBI, U. of Birmingham | |
| mzml2isa | container-mzml2isa | v0.4.28_cv0.2 | P. Moreno, K. Peters | EMBL-EBI, IPB Halle | |
| Batman | container-batman | v1.2.1.0.7_cv1.0 | P. Moreno, J. Gao | EMBL-EBI, Imperial College London | |
| metfrag-cli | container-metfrag-cli | v2.4.2_cv0.2 | Kristian Peters | IPB Halle | |
| w4m - metabolights downloader | |||||
| w4m - univariate | [container-univariate] | v2.2.3_cv1.2 | Pierrick Roger Mele | CEA | |
| w4m - multivariate | [container-multivariate] | v2.3.10_cv1.1 | Pierrick Roger Mele | CEA | |
| w4m - biosigner | [container-biosigner] | v2.2.7_cv1.1 | Pierrick Roger Mele | CEA | |
| w4m - LC/MS matching | [container-lcmsmatching] | v3.1.6_cv1.3 | Pierrick Roger Mele | CEA | |
| metabolite ID converter | container-MetaboliteIDConverter | v0.5.1_cv1.0 | Benjamin Merlet | INRA | |
| Note: maintainers are for containers, not necessarily tool authors. |
| Workflow | Maintainer | Affiliation | Docs |
|---|---|---|---|
| Sacurine workflow | Etienne Thévenot | W4M | docs |
| C13 Stationary Fluxomics |
| Provider | Docs |
|---|---|
| Google Cloud Platform | portal/direct deployment |
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Funded by the EC Horizon 2020 programme, grant agreement number 654241 |  |
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