Repositories list

• btp-manuals-md

  Public
  This contains all material for Markdown version of BTP workshops

  8•0•1•0•Updated Feb 14, 2023Feb 14, 2023

• cancer-manuals

  Public
  5•0•0•0•Updated Feb 14, 2023Feb 14, 2023

• btp-module-rna-seq

  Public
  Bioinformatics Training Platform (BTP) Module: RNA-Seq

  Shell

  •2•1•0•0•Updated Sep 27, 2019Sep 27, 2019

• ngs-workshop-melb-2018

  Public
  NGS Workshop: Melbourne November 2018

  TeX

  •0•1•0•0•Updated Sep 26, 2019Sep 26, 2019

• btp-module-denovo-canu

  Public
  de novo assembly section - PacBio + Illumina read using the canu workflow

  0•0•0•0•Updated Sep 26, 2019Sep 26, 2019

• btp-module-ngs-mapping

  Public
  Bioinformatics Training Platform (BTP) Module: NGS read mapping with Bowtie2

  JavaScript

  •1•0•0•0•Updated Sep 24, 2019Sep 24, 2019

• denovo-module-scaffolding

  Public
  denovo-module-scaffolding

  0•0•0•0•Updated Sep 24, 2019Sep 24, 2019

• denovo-module-euk

  Public
  denovo-module-euk

  0•0•0•0•Updated Sep 24, 2019Sep 24, 2019

• btp-handout-style

  Public
  A LaTeX style file for use with workshop handouts

  TeX

  •0•0•0•0•Updated Sep 17, 2019Sep 17, 2019

• btp-module-velvet

  Public
  Bioinformatics Training Platform (BTP) Module: Velvet for de novo assembly

  TeX

  •0•0•0•0•Updated Nov 5, 2018Nov 5, 2018

• btp-workshop-ngs

  Public
  Bioinformatics Training Platform (BTP) Workshop: Introduction to NGS

  TeX

  •10•10•1•1•Updated Oct 31, 2018Oct 31, 2018

• btp-module-chip-seq

  Public
  Bioinformatics Training Platform (BTP) Module: ChIP-Seq

  TeX

  •1•1•0•0•Updated Oct 31, 2018Oct 31, 2018

• btp-workshop-cancer

  Public
  btp-workshop-cancer

  JavaScript

  •2•0•0•0•Updated Dec 22, 2017Dec 22, 2017

• Trainer-information

  Public
  Tips and tricks for trainers and workshop hosts. Includes SOP for hosting a workshop.

  0•0•1•0•Updated Dec 22, 2017Dec 22, 2017

• btp-tools

  Public
  Analysis tools installers and fpm-cookery recipes for building .deb packages for the Bioinformatics Training Platform

  Shell

  •0•1•5•0•Updated Dec 2, 2017Dec 2, 2017

• btp-module-ngs-cli

  Public
  btp-module-ngs-cli

  JavaScript

  •0•0•0•0•Updated Oct 13, 2017Oct 13, 2017

• btp-module-ngs-qc

  Public
  Bioinformatics Training Platform (BTP) Module: NGS Quality Control

  JavaScript

  •3•0•0•0•Updated Oct 13, 2017Oct 13, 2017

• cancer-module-viz

  Public
  cancer-module-viz

  R

  •0•0•0•0•Updated Oct 13, 2017Oct 13, 2017

• cancer-module-somatic

  Public
  cancer-module-somatic

  JavaScript

  •0•0•0•0•Updated Oct 13, 2017Oct 13, 2017

• cancer-module-sv

  Public
  cancer-module-sv

  JavaScript

  •1•1•0•0•Updated Oct 13, 2017Oct 13, 2017

• cancer-module-cnv

  Public
  cancer-module-cnv

  JavaScript

  •2•2•0•0•Updated Oct 13, 2017Oct 13, 2017

• cancer-module-snv

  Public
  cancer-module-snv

  JavaScript

  •0•0•0•0•Updated Oct 13, 2017Oct 13, 2017

• bpa-csiro-workshops.github.io

  Public
  bpa-csiro-workshops.github.io

  CSS

  •2•2•0•0•Updated Oct 9, 2017Oct 9, 2017

• cancer-module-alignment

  Public
  cancer-module-alignment

  TeX

  •0•0•0•0•Updated Jul 11, 2017Jul 11, 2017

• metagenomics-manuals

  Public
  3•0•0•0•Updated Jul 11, 2017Jul 11, 2017

• intro-ngs-manuals

  Public
  Introduction to NGS Data Analysis: 27th - 29th June 2017, University of Sydney

  2•0•0•0•Updated Jul 7, 2017Jul 7, 2017

• btp-module-template-md

  Public
  This is the Markdown template for BTP modules

  0•0•0•0•Updated Jun 2, 2017Jun 2, 2017

• denovo-module-cli

  Public
  denovo-module-cli

  TeX

  •0•0•0•0•Updated May 9, 2017May 9, 2017

• denovo-module-bac

  Public
  denovo-module-bac

  TeX

  •0•0•0•0•Updated May 9, 2017May 9, 2017

• btp-module-ngs-bio

  Public
  btp-module-ngs-bio

  TeX

  •0•0•0•0•Updated May 9, 2017May 9, 2017